==31020== Memcheck, a memory error detector
==31020== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==31020== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==31020== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningTumourSpheroidSimulationsTutorial -malloc_debug -malloc_dump -memory_info
==31020== Parent PID: 15461
==31020== 
==31020== 
==31020== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==31020== Open file descriptor 10: /dev/shm/open_mpi.0000
==31020==    at 0x1196A3B6: __open_nocancel (open64_nocancel.c:39)
==31020==    by 0x118EE943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==31020==    by 0x163D989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x163D9A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x163D8C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x163D8F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x162A8159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x11E0B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E1049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E112C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E0818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E42627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x12A67446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31020==    by 0xF29671B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31020==    by 0xF296769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31020==    by 0x401B974: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==31020==    by 0x4016A61: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31020==    by 0x401919E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31020==    by 0x4019031: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31020==    by 0x401972B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31020==    by 0x4014EB8: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18)
==31020== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31020== Open file descriptor 9:
==31020==    at 0x1197884B: eventfd (syscall-template.S:120)
==31020==    by 0x16439188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x16437395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x16437704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x164379F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x1639E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x1639E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x162A8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x11E0B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E1049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E112C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E0818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E42627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x12A67446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31020==    by 0xF29671B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31020==    by 0xF296769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31020==    by 0x401B974: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==31020==    by 0x4016A61: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31020==    by 0x401919E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31020==    by 0x4019031: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31020==    by 0x401972B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31020==    by 0x4014EB8: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18)
==31020== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31020== Open file descriptor 8:
==31020==    at 0x1196913B: pipe2 (syscall-template.S:120)
==31020==    by 0x16438F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x1643B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x1643B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x164378AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x1639E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x1639E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x162A8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x11E0B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E1049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E112C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E0818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E42627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x12A67446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31020==    by 0xF29671B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31020==    by 0xF296769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31020==    by 0x401B974: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==31020==    by 0x4016A61: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31020==    by 0x401919E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31020==    by 0x4019031: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31020==    by 0x401972B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31020==    by 0x4014EB8: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18)
==31020== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31020== Open file descriptor 7:
==31020==    at 0x1196913B: pipe2 (syscall-template.S:120)
==31020==    by 0x16438F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x1643B579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x1643B774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x164378AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x1639E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x1639E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x162A8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x11E0B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E1049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E112C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E0818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E42627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x12A67446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31020==    by 0xF29671B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31020==    by 0xF296769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31020==    by 0x401B974: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==31020==    by 0x4016A61: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31020==    by 0x401919E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31020==    by 0x4019031: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31020==    by 0x401972B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31020==    by 0x4014EB8: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18)
==31020== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31020== Open file descriptor 5:
==31020==    at 0x1197934B: epoll_create1 (syscall-template.S:120)
==31020==    by 0x1643B6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x164378AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==31020==    by 0x1639E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x1639E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x162A8120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==31020==    by 0x11E0B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E1049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E112C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E0818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x11E42627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==31020==    by 0x12A67446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==31020==    by 0xF29671B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==31020==    by 0xF296769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==31020==    by 0x401B974: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==31020==    by 0x4016A61: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==31020==    by 0x401919E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==31020==    by 0x4019031: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==31020==    by 0x401972B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==31020==    by 0x4014EB8: main (TestRunningTumourSpheroidSimulationsTutorial.cpp:18)
==31020== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==31020== 
==31020== HEAP SUMMARY:
==31020==     in use at exit: 128,946 bytes in 934 blocks
==31020==   total heap usage: 2,021,088 allocs, 2,020,154 frees, 408,548,205 bytes allocated
==31020== 
==31020== LEAK SUMMARY:
==31020==    definitely lost: 0 bytes in 0 blocks
==31020==    indirectly lost: 0 bytes in 0 blocks
==31020==      possibly lost: 0 bytes in 0 blocks
==31020==    still reachable: 11,973 bytes in 45 blocks
==31020==         suppressed: 116,973 bytes in 889 blocks
==31020== Reachable blocks (those to which a pointer was found) are not shown.
==31020== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==31020== 
==31020== For lists of detected and suppressed errors, rerun with: -s
==31020== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)