==16415== Memcheck, a memory error detector
==16415== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==16415== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==16415== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestNodeBasedCellPopulationWithParticles -malloc_debug -malloc_dump -memory_info
==16415== Parent PID: 15694
==16415== 
==16415== 
==16415== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==16415== Open file descriptor 10: /dev/shm/open_mpi.0000
==16415==    at 0x11A153B6: __open_nocancel (open64_nocancel.c:39)
==16415==    by 0x11999943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==16415==    by 0x166C289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x166C2A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x166C1C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x166C1F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x16591159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x1221B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x1222049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x122212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x1221818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x12252627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x12E32446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16415==    by 0xF21A71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16415==    by 0xF21A769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16415==    by 0x4254854: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16415==    by 0x4249E51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16415==    by 0x424EF7E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16415==    by 0x424EDA2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16415==    by 0x424F54B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16415==    by 0x4247E78: main (TestNodeBasedCellPopulationWithParticles.cpp:19)
==16415== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16415== Open file descriptor 9:
==16415==    at 0x11A2384B: eventfd (syscall-template.S:120)
==16415==    by 0x16724188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x16722395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x16722704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x167229F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x166870D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x166871E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x16591120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x1221B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x1222049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x122212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x1221818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x12252627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x12E32446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16415==    by 0xF21A71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16415==    by 0xF21A769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16415==    by 0x4254854: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16415==    by 0x4249E51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16415==    by 0x424EF7E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16415==    by 0x424EDA2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16415==    by 0x424F54B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16415==    by 0x4247E78: main (TestNodeBasedCellPopulationWithParticles.cpp:19)
==16415== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16415== Open file descriptor 8:
==16415==    at 0x11A1413B: pipe2 (syscall-template.S:120)
==16415==    by 0x16723F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x16726579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x16726774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x167228AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x166870D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x166871E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x16591120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x1221B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x1222049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x122212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x1221818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x12252627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x12E32446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16415==    by 0xF21A71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16415==    by 0xF21A769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16415==    by 0x4254854: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16415==    by 0x4249E51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16415==    by 0x424EF7E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16415==    by 0x424EDA2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16415==    by 0x424F54B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16415==    by 0x4247E78: main (TestNodeBasedCellPopulationWithParticles.cpp:19)
==16415== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16415== Open file descriptor 7:
==16415==    at 0x11A1413B: pipe2 (syscall-template.S:120)
==16415==    by 0x16723F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x16726579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x16726774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x167228AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x166870D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x166871E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x16591120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x1221B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x1222049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x122212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x1221818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x12252627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x12E32446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16415==    by 0xF21A71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16415==    by 0xF21A769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16415==    by 0x4254854: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16415==    by 0x4249E51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16415==    by 0x424EF7E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16415==    by 0x424EDA2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16415==    by 0x424F54B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16415==    by 0x4247E78: main (TestNodeBasedCellPopulationWithParticles.cpp:19)
==16415== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16415== Open file descriptor 6:
==16415==    at 0x11A2434B: epoll_create1 (syscall-template.S:120)
==16415==    by 0x167266FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x167228AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16415==    by 0x166870D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x166871E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x16591120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16415==    by 0x1221B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x1222049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x122212C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x1221818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x12252627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16415==    by 0x12E32446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16415==    by 0xF21A71B: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16415==    by 0xF21A769: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16415==    by 0x4254854: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16415==    by 0x4249E51: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16415==    by 0x424EF7E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16415==    by 0x424EDA2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16415==    by 0x424F54B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16415==    by 0x4247E78: main (TestNodeBasedCellPopulationWithParticles.cpp:19)
==16415== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16415== 
==16415== HEAP SUMMARY:
==16415==     in use at exit: 126,468 bytes in 902 blocks
==16415==   total heap usage: 92,884 allocs, 91,982 frees, 18,767,839 bytes allocated
==16415== 
==16415== LEAK SUMMARY:
==16415==    definitely lost: 0 bytes in 0 blocks
==16415==    indirectly lost: 0 bytes in 0 blocks
==16415==      possibly lost: 0 bytes in 0 blocks
==16415==    still reachable: 11,973 bytes in 45 blocks
==16415==         suppressed: 114,495 bytes in 857 blocks
==16415== Reachable blocks (those to which a pointer was found) are not shown.
==16415== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==16415== 
==16415== For lists of detected and suppressed errors, rerun with: -s
==16415== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)