==15480== Memcheck, a memory error detector
==15480== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==15480== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==15480== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellCycleModelOdeSolver -malloc_debug -malloc_dump -memory_info
==15480== Parent PID: 15453
==15480== 
==15480== 
==15480== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==15480== Open file descriptor 10: /dev/shm/open_mpi.0000
==15480==    at 0xF79B3B6: __open_nocancel (open64_nocancel.c:39)
==15480==    by 0xF71F943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==15480==    by 0x16AD889E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x16AD8A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x16AD7C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x16AD7F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x169A7159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0xF0340E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF06B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xE035446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15480==    by 0xD6FE98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15480==    by 0xD6FE9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15480==    by 0x4075C31: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15480==    by 0x406FFBF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15480==    by 0x4073AF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15480==    by 0x407391A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15480==    by 0x4074097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15480==    by 0x406DD82: main (TestCellCycleModelOdeSolver.cpp:19)
==15480== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15480== Open file descriptor 9:
==15480==    at 0xF7A984B: eventfd (syscall-template.S:120)
==15480==    by 0x16B38188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16B36395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16B36704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16B369F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16A9D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x16A9D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x169A7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0xF0340E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF06B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xE035446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15480==    by 0xD6FE98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15480==    by 0xD6FE9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15480==    by 0x4075C31: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15480==    by 0x406FFBF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15480==    by 0x4073AF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15480==    by 0x407391A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15480==    by 0x4074097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15480==    by 0x406DD82: main (TestCellCycleModelOdeSolver.cpp:19)
==15480== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15480== Open file descriptor 8:
==15480==    at 0xF79A13B: pipe2 (syscall-template.S:120)
==15480==    by 0x16B37F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16B3A579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16B3A774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16B368AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16A9D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x16A9D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x169A7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0xF0340E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF06B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xE035446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15480==    by 0xD6FE98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15480==    by 0xD6FE9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15480==    by 0x4075C31: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15480==    by 0x406FFBF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15480==    by 0x4073AF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15480==    by 0x407391A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15480==    by 0x4074097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15480==    by 0x406DD82: main (TestCellCycleModelOdeSolver.cpp:19)
==15480== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15480== Open file descriptor 7:
==15480==    at 0xF79A13B: pipe2 (syscall-template.S:120)
==15480==    by 0x16B37F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16B3A579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16B3A774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16B368AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16A9D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x16A9D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x169A7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0xF0340E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF06B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xE035446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15480==    by 0xD6FE98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15480==    by 0xD6FE9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15480==    by 0x4075C31: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15480==    by 0x406FFBF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15480==    by 0x4073AF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15480==    by 0x407391A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15480==    by 0x4074097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15480==    by 0x406DD82: main (TestCellCycleModelOdeSolver.cpp:19)
==15480== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15480== Open file descriptor 6:
==15480==    at 0xF7AA34B: epoll_create1 (syscall-template.S:120)
==15480==    by 0x16B3A6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16B368AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15480==    by 0x16A9D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x16A9D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0x169A7120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15480==    by 0xF0340E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03949F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03A2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF03118F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xF06B627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15480==    by 0xE035446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15480==    by 0xD6FE98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15480==    by 0xD6FE9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15480==    by 0x4075C31: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15480==    by 0x406FFBF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15480==    by 0x4073AF8: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15480==    by 0x407391A: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15480==    by 0x4074097: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15480==    by 0x406DD82: main (TestCellCycleModelOdeSolver.cpp:19)
==15480== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15480== 
==15480== HEAP SUMMARY:
==15480==     in use at exit: 104,596 bytes in 637 blocks
==15480==   total heap usage: 527,100 allocs, 526,463 frees, 14,782,564 bytes allocated
==15480== 
==15480== LEAK SUMMARY:
==15480==    definitely lost: 0 bytes in 0 blocks
==15480==    indirectly lost: 0 bytes in 0 blocks
==15480==      possibly lost: 0 bytes in 0 blocks
==15480==    still reachable: 11,973 bytes in 45 blocks
==15480==         suppressed: 92,623 bytes in 592 blocks
==15480== Reachable blocks (those to which a pointer was found) are not shown.
==15480== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==15480== 
==15480== For lists of detected and suppressed errors, rerun with: -s
==15480== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)