==14243== Memcheck, a memory error detector ==14243== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==14243== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==14243== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestCryptStatistics -malloc_debug -malloc_dump -memory_info ==14243== Parent PID: 13723 ==14243== ==14243== ==14243== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==14243== Open file descriptor 10: /dev/shm/open_mpi.0000 ==14243== at 0x14D243B6: __open_nocancel (open64_nocancel.c:39) ==14243== by 0x14CA8943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==14243== by 0x1A25189E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A251A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A250C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A250F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A120159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x144DB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144E049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144E12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144D818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x14512627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x6B08446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14243== by 0x1443298D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14243== by 0x144329DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14243== by 0x40E6403: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14243== by 0x40DD271: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14243== by 0x40E1C3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14243== by 0x40E1AA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14243== by 0x40E220B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14243== by 0x40DB50B: main (TestCryptStatistics.cpp:18) ==14243== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14243== Open file descriptor 9: ==14243== at 0x14D3284B: eventfd (syscall-template.S:120) ==14243== by 0x1A2B3188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2B1395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2B1704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2B19F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2160D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A2161E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A120120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x144DB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144E049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144E12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144D818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x14512627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x6B08446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14243== by 0x1443298D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14243== by 0x144329DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14243== by 0x40E6403: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14243== by 0x40DD271: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14243== by 0x40E1C3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14243== by 0x40E1AA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14243== by 0x40E220B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14243== by 0x40DB50B: main (TestCryptStatistics.cpp:18) ==14243== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14243== Open file descriptor 8: ==14243== at 0x14D2313B: pipe2 (syscall-template.S:120) ==14243== by 0x1A2B2F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2B5579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2B5774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2B18AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2160D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A2161E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A120120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x144DB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144E049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144E12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144D818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x14512627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x6B08446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14243== by 0x1443298D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14243== by 0x144329DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14243== by 0x40E6403: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14243== by 0x40DD271: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14243== by 0x40E1C3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14243== by 0x40E1AA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14243== by 0x40E220B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14243== by 0x40DB50B: main (TestCryptStatistics.cpp:18) ==14243== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14243== Open file descriptor 7: ==14243== at 0x14D2313B: pipe2 (syscall-template.S:120) ==14243== by 0x1A2B2F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2B5579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2B5774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2B18AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2160D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A2161E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A120120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x144DB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144E049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144E12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144D818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x14512627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x6B08446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14243== by 0x1443298D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14243== by 0x144329DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14243== by 0x40E6403: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14243== by 0x40DD271: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14243== by 0x40E1C3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14243== by 0x40E1AA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14243== by 0x40E220B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14243== by 0x40DB50B: main (TestCryptStatistics.cpp:18) ==14243== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14243== Open file descriptor 4: ==14243== at 0x14D3334B: epoll_create1 (syscall-template.S:120) ==14243== by 0x1A2B56FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2B18AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==14243== by 0x1A2160D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A2161E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x1A120120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==14243== by 0x144DB0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144E049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144E12C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x144D818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x14512627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==14243== by 0x6B08446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==14243== by 0x1443298D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==14243== by 0x144329DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==14243== by 0x40E6403: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==14243== by 0x40DD271: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==14243== by 0x40E1C3E: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==14243== by 0x40E1AA1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==14243== by 0x40E220B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==14243== by 0x40DB50B: main (TestCryptStatistics.cpp:18) ==14243== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==14243== ==14243== HEAP SUMMARY: ==14243== in use at exit: 126,423 bytes in 901 blocks ==14243== total heap usage: 1,800,084 allocs, 1,799,183 frees, 118,297,015 bytes allocated ==14243== ==14243== LEAK SUMMARY: ==14243== definitely lost: 0 bytes in 0 blocks ==14243== indirectly lost: 0 bytes in 0 blocks ==14243== possibly lost: 0 bytes in 0 blocks ==14243== still reachable: 11,949 bytes in 44 blocks ==14243== suppressed: 114,474 bytes in 857 blocks ==14243== Reachable blocks (those to which a pointer was found) are not shown. ==14243== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==14243== ==14243== For lists of detected and suppressed errors, rerun with: -s ==14243== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)