==15094== Memcheck, a memory error detector
==15094== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==15094== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==15094== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/heart/test/TestCvodeCellsWithDataClamp -malloc_debug -malloc_dump -memory_info
==15094== Parent PID: 14917
==15094== 
==15094== 
==15094== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==15094== Open file descriptor 10: /dev/shm/open_mpi.0000
==15094==    at 0xA37B3B6: __open_nocancel (open64_nocancel.c:39)
==15094==    by 0xA2FF943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==15094==    by 0x11AC389E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11AC3A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11AC2C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11AC2F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11992159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x9B320E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B3749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B382C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B2F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B69627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x8824446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15094==    by 0x9A8998D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15094==    by 0x9A899DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15094==    by 0x402D02B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15094==    by 0x4027A59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15094==    by 0x402AF4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15094==    by 0x402AD70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15094==    by 0x402B4ED: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15094==    by 0x4025765: main (TestCvodeCellsWithDataClamp.cpp:19)
==15094== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15094== Open file descriptor 9:
==15094==    at 0xA38984B: eventfd (syscall-template.S:120)
==15094==    by 0x11B23188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11B21395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11B21704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11B219F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11A880D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11A881E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11992120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x9B320E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B3749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B382C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B2F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B69627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x8824446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15094==    by 0x9A8998D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15094==    by 0x9A899DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15094==    by 0x402D02B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15094==    by 0x4027A59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15094==    by 0x402AF4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15094==    by 0x402AD70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15094==    by 0x402B4ED: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15094==    by 0x4025765: main (TestCvodeCellsWithDataClamp.cpp:19)
==15094== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15094== Open file descriptor 8:
==15094==    at 0xA37A13B: pipe2 (syscall-template.S:120)
==15094==    by 0x11B22F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11B25579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11B25774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11B218AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11A880D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11A881E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11992120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x9B320E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B3749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B382C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B2F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B69627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x8824446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15094==    by 0x9A8998D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15094==    by 0x9A899DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15094==    by 0x402D02B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15094==    by 0x4027A59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15094==    by 0x402AF4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15094==    by 0x402AD70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15094==    by 0x402B4ED: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15094==    by 0x4025765: main (TestCvodeCellsWithDataClamp.cpp:19)
==15094== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15094== Open file descriptor 7:
==15094==    at 0xA37A13B: pipe2 (syscall-template.S:120)
==15094==    by 0x11B22F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11B25579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11B25774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11B218AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11A880D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11A881E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11992120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x9B320E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B3749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B382C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B2F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B69627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x8824446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15094==    by 0x9A8998D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15094==    by 0x9A899DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15094==    by 0x402D02B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15094==    by 0x4027A59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15094==    by 0x402AF4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15094==    by 0x402AD70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15094==    by 0x402B4ED: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15094==    by 0x4025765: main (TestCvodeCellsWithDataClamp.cpp:19)
==15094== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15094== Open file descriptor 5:
==15094==    at 0xA38A34B: epoll_create1 (syscall-template.S:120)
==15094==    by 0x11B256FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11B218AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15094==    by 0x11A880D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11A881E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x11992120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15094==    by 0x9B320E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B3749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B382C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B2F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x9B69627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15094==    by 0x8824446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15094==    by 0x9A8998D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15094==    by 0x9A899DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15094==    by 0x402D02B: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15094==    by 0x4027A59: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15094==    by 0x402AF4E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15094==    by 0x402AD70: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15094==    by 0x402B4ED: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15094==    by 0x4025765: main (TestCvodeCellsWithDataClamp.cpp:19)
==15094== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15094== 
==15094== HEAP SUMMARY:
==15094==     in use at exit: 132,929 bytes in 906 blocks
==15094==   total heap usage: 82,930 allocs, 82,024 frees, 153,954,975 bytes allocated
==15094== 
==15094== LEAK SUMMARY:
==15094==    definitely lost: 0 bytes in 0 blocks
==15094==    indirectly lost: 0 bytes in 0 blocks
==15094==      possibly lost: 0 bytes in 0 blocks
==15094==    still reachable: 18,520 bytes in 53 blocks
==15094==         suppressed: 114,409 bytes in 853 blocks
==15094== Reachable blocks (those to which a pointer was found) are not shown.
==15094== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==15094== 
==15094== For lists of detected and suppressed errors, rerun with: -s
==15094== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)