==16271== Memcheck, a memory error detector ==16271== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16271== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16271== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestGenericEventHandler -malloc_debug -malloc_dump -memory_info ==16271== Parent PID: 16192 ==16271== ==16271== ==16271== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16271== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16271== at 0x51853B6: __open_nocancel (open64_nocancel.c:39) ==16271== by 0x5109943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16271== by 0x71AD89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x71ADA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x71ACC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x71ACF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x707C159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x4A1E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A2349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A242C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A1B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A55627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x5B76446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16271== by 0x495198D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16271== by 0x49519DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16271== by 0x40171AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16271== by 0x4011CF5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16271== by 0x40151AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16271== by 0x4014FCC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16271== by 0x4015749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16271== by 0x400FF75: main (TestGenericEventHandler.cpp:19) ==16271== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16271== Open file descriptor 9: ==16271== at 0x519384B: eventfd (syscall-template.S:120) ==16271== by 0x720D188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x720B395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x720B704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x720B9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x71720D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x71721E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x707C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x4A1E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A2349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A242C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A1B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A55627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x5B76446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16271== by 0x495198D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16271== by 0x49519DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16271== by 0x40171AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16271== by 0x4011CF5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16271== by 0x40151AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16271== by 0x4014FCC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16271== by 0x4015749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16271== by 0x400FF75: main (TestGenericEventHandler.cpp:19) ==16271== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16271== Open file descriptor 8: ==16271== at 0x518413B: pipe2 (syscall-template.S:120) ==16271== by 0x720CF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x720F579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x720F774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x720B8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x71720D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x71721E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x707C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x4A1E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A2349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A242C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A1B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A55627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x5B76446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16271== by 0x495198D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16271== by 0x49519DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16271== by 0x40171AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16271== by 0x4011CF5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16271== by 0x40151AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16271== by 0x4014FCC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16271== by 0x4015749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16271== by 0x400FF75: main (TestGenericEventHandler.cpp:19) ==16271== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16271== Open file descriptor 7: ==16271== at 0x518413B: pipe2 (syscall-template.S:120) ==16271== by 0x720CF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x720F579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x720F774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x720B8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x71720D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x71721E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x707C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x4A1E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A2349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A242C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A1B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A55627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x5B76446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16271== by 0x495198D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16271== by 0x49519DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16271== by 0x40171AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16271== by 0x4011CF5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16271== by 0x40151AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16271== by 0x4014FCC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16271== by 0x4015749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16271== by 0x400FF75: main (TestGenericEventHandler.cpp:19) ==16271== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16271== Open file descriptor 4: ==16271== at 0x519434B: epoll_create1 (syscall-template.S:120) ==16271== by 0x720F6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x720B8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16271== by 0x71720D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x71721E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x707C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16271== by 0x4A1E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A2349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A242C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A1B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x4A55627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16271== by 0x5B76446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16271== by 0x495198D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16271== by 0x49519DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16271== by 0x40171AA: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==16271== by 0x4011CF5: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16271== by 0x40151AA: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16271== by 0x4014FCC: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16271== by 0x4015749: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16271== by 0x400FF75: main (TestGenericEventHandler.cpp:19) ==16271== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16271== ==16271== HEAP SUMMARY: ==16271== in use at exit: 124,551 bytes in 897 blocks ==16271== total heap usage: 25,190 allocs, 24,293 frees, 10,103,810 bytes allocated ==16271== ==16271== LEAK SUMMARY: ==16271== definitely lost: 0 bytes in 0 blocks ==16271== indirectly lost: 0 bytes in 0 blocks ==16271== possibly lost: 0 bytes in 0 blocks ==16271== still reachable: 10,073 bytes in 40 blocks ==16271== suppressed: 114,478 bytes in 857 blocks ==16271== Reachable blocks (those to which a pointer was found) are not shown. ==16271== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16271== ==16271== For lists of detected and suppressed errors, rerun with: -s ==16271== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)