==28687== Memcheck, a memory error detector
==28687== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==28687== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==28687== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestOnLatticeSimulationWithPottsBasedCellPopulation -malloc_debug -malloc_dump -memory_info
==28687== Parent PID: 15453
==28687== 
==28687== 
==28687== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==28687== Open file descriptor 10: /dev/shm/open_mpi.0000
==28687==    at 0x118853B6: __open_nocancel (open64_nocancel.c:39)
==28687==    by 0x11809943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==28687==    by 0x1653389E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x16533A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x16532C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x16532F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x16402159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x1208C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x1209149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x120922C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x1208918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x120C3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x12CA3446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28687==    by 0xF08A98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28687==    by 0xF08A9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28687==    by 0x4109484: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==28687==    by 0x40FFE11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28687==    by 0x41049AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28687==    by 0x41047A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28687==    by 0x4104FBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28687==    by 0x40FDC8B: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19)
==28687== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28687== Open file descriptor 9:
==28687==    at 0x1189384B: eventfd (syscall-template.S:120)
==28687==    by 0x16595188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x16593395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x16593704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x165939F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x164F80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x164F81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x16402120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x1208C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x1209149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x120922C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x1208918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x120C3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x12CA3446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28687==    by 0xF08A98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28687==    by 0xF08A9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28687==    by 0x4109484: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==28687==    by 0x40FFE11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28687==    by 0x41049AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28687==    by 0x41047A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28687==    by 0x4104FBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28687==    by 0x40FDC8B: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19)
==28687== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28687== Open file descriptor 8:
==28687==    at 0x1188413B: pipe2 (syscall-template.S:120)
==28687==    by 0x16594F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x16597579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x16597774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x165938AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x164F80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x164F81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x16402120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x1208C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x1209149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x120922C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x1208918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x120C3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x12CA3446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28687==    by 0xF08A98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28687==    by 0xF08A9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28687==    by 0x4109484: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==28687==    by 0x40FFE11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28687==    by 0x41049AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28687==    by 0x41047A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28687==    by 0x4104FBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28687==    by 0x40FDC8B: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19)
==28687== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28687== Open file descriptor 7:
==28687==    at 0x1188413B: pipe2 (syscall-template.S:120)
==28687==    by 0x16594F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x16597579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x16597774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x165938AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x164F80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x164F81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x16402120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x1208C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x1209149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x120922C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x1208918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x120C3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x12CA3446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28687==    by 0xF08A98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28687==    by 0xF08A9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28687==    by 0x4109484: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==28687==    by 0x40FFE11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28687==    by 0x41049AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28687==    by 0x41047A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28687==    by 0x4104FBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28687==    by 0x40FDC8B: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19)
==28687== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28687== Open file descriptor 5:
==28687==    at 0x1189434B: epoll_create1 (syscall-template.S:120)
==28687==    by 0x165976FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x165938AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==28687==    by 0x164F80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x164F81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x16402120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==28687==    by 0x1208C0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x1209149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x120922C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x1208918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x120C3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==28687==    by 0x12CA3446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==28687==    by 0xF08A98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==28687==    by 0xF08A9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==28687==    by 0x4109484: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==28687==    by 0x40FFE11: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==28687==    by 0x41049AE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==28687==    by 0x41047A2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==28687==    by 0x4104FBB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==28687==    by 0x40FDC8B: main (TestOnLatticeSimulationWithPottsBasedCellPopulation.cpp:19)
==28687== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==28687== 
==28687== HEAP SUMMARY:
==28687==     in use at exit: 104,563 bytes in 634 blocks
==28687==   total heap usage: 11,456,104 allocs, 11,455,470 frees, 949,106,902 bytes allocated
==28687== 
==28687== LEAK SUMMARY:
==28687==    definitely lost: 0 bytes in 0 blocks
==28687==    indirectly lost: 0 bytes in 0 blocks
==28687==      possibly lost: 0 bytes in 0 blocks
==28687==    still reachable: 11,989 bytes in 46 blocks
==28687==         suppressed: 92,574 bytes in 588 blocks
==28687== Reachable blocks (those to which a pointer was found) are not shown.
==28687== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==28687== 
==28687== For lists of detected and suppressed errors, rerun with: -s
==28687== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)