==16329== Memcheck, a memory error detector ==16329== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16329== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16329== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestRandomNumberGenerator -malloc_debug -malloc_dump -memory_info ==16329== Parent PID: 16192 ==16329== ==16329== ==16329== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16329== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16329== at 0x6A0E3B6: __open_nocancel (open64_nocancel.c:39) ==16329== by 0x6992943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16329== by 0x9B5689E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9B56A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9B55C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9B55F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9A25159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x62A90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62AE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62AF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62A618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62E0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x52A8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16329== by 0x497198D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16329== by 0x49719DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16329== by 0x402CC61: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16329== by 0x4027997: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16329== by 0x402AAFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16329== by 0x402A98F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16329== by 0x402B075: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16329== by 0x4026042: main (TestRandomNumberGenerator.cpp:18) ==16329== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16329== Open file descriptor 9: ==16329== at 0x6A1C84B: eventfd (syscall-template.S:120) ==16329== by 0x9BB6188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9BB4395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9BB4704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9BB49F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9B1B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9B1B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9A25120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x62A90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62AE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62AF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62A618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62E0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x52A8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16329== by 0x497198D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16329== by 0x49719DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16329== by 0x402CC61: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16329== by 0x4027997: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16329== by 0x402AAFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16329== by 0x402A98F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16329== by 0x402B075: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16329== by 0x4026042: main (TestRandomNumberGenerator.cpp:18) ==16329== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16329== Open file descriptor 8: ==16329== at 0x6A0D13B: pipe2 (syscall-template.S:120) ==16329== by 0x9BB5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9BB8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9BB8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9BB48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9B1B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9B1B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9A25120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x62A90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62AE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62AF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62A618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62E0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x52A8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16329== by 0x497198D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16329== by 0x49719DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16329== by 0x402CC61: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16329== by 0x4027997: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16329== by 0x402AAFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16329== by 0x402A98F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16329== by 0x402B075: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16329== by 0x4026042: main (TestRandomNumberGenerator.cpp:18) ==16329== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16329== Open file descriptor 7: ==16329== at 0x6A0D13B: pipe2 (syscall-template.S:120) ==16329== by 0x9BB5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9BB8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9BB8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9BB48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9B1B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9B1B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9A25120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x62A90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62AE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62AF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62A618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62E0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x52A8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16329== by 0x497198D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16329== by 0x49719DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16329== by 0x402CC61: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16329== by 0x4027997: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16329== by 0x402AAFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16329== by 0x402A98F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16329== by 0x402B075: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16329== by 0x4026042: main (TestRandomNumberGenerator.cpp:18) ==16329== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16329== Open file descriptor 4: ==16329== at 0x6A1D34B: epoll_create1 (syscall-template.S:120) ==16329== by 0x9BB86FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9BB48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16329== by 0x9B1B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9B1B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x9A25120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16329== by 0x62A90E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62AE49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62AF2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62A618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x62E0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16329== by 0x52A8446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16329== by 0x497198D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==16329== by 0x49719DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==16329== by 0x402CC61: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70) ==16329== by 0x4027997: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==16329== by 0x402AAFE: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==16329== by 0x402A98F: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16329== by 0x402B075: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16329== by 0x4026042: main (TestRandomNumberGenerator.cpp:18) ==16329== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16329== ==16329== HEAP SUMMARY: ==16329== in use at exit: 127,105 bytes in 898 blocks ==16329== total heap usage: 25,238 allocs, 24,340 frees, 10,187,960 bytes allocated ==16329== ==16329== LEAK SUMMARY: ==16329== definitely lost: 0 bytes in 0 blocks ==16329== indirectly lost: 0 bytes in 0 blocks ==16329== possibly lost: 0 bytes in 0 blocks ==16329== still reachable: 12,625 bytes in 41 blocks ==16329== suppressed: 114,480 bytes in 857 blocks ==16329== Reachable blocks (those to which a pointer was found) are not shown. ==16329== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16329== ==16329== For lists of detected and suppressed errors, rerun with: -s ==16329== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)