==14379== Memcheck, a memory error detector
==14379== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==14379== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==14379== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningMeshBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info
==14379== Parent PID: 13723
==14379== 
==14379== 
==14379== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==14379== Open file descriptor 10: /dev/shm/open_mpi.0000
==14379==    at 0x14A943B6: __open_nocancel (open64_nocancel.c:39)
==14379==    by 0x14A18943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==14379==    by 0x1A15689E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A156A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A155C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A155F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A025159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1432F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x1433449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x143352C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x1432C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x14366627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x69A0446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14379==    by 0x1428498D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14379==    by 0x142849DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14379==    by 0x4021223: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14379==    by 0x401C0E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14379==    by 0x401ED9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14379==    by 0x401EC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14379==    by 0x401F36B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14379==    by 0x401A37B: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18)
==14379== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14379== Open file descriptor 9:
==14379==    at 0x14AA284B: eventfd (syscall-template.S:120)
==14379==    by 0x1A1B6188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A1B4395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A1B4704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A1B49F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A11B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A11B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A025120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1432F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x1433449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x143352C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x1432C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x14366627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x69A0446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14379==    by 0x1428498D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14379==    by 0x142849DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14379==    by 0x4021223: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14379==    by 0x401C0E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14379==    by 0x401ED9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14379==    by 0x401EC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14379==    by 0x401F36B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14379==    by 0x401A37B: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18)
==14379== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14379== Open file descriptor 8:
==14379==    at 0x14A9313B: pipe2 (syscall-template.S:120)
==14379==    by 0x1A1B5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A1B8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A1B8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A1B48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A11B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A11B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A025120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1432F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x1433449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x143352C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x1432C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x14366627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x69A0446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14379==    by 0x1428498D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14379==    by 0x142849DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14379==    by 0x4021223: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14379==    by 0x401C0E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14379==    by 0x401ED9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14379==    by 0x401EC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14379==    by 0x401F36B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14379==    by 0x401A37B: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18)
==14379== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14379== Open file descriptor 7:
==14379==    at 0x14A9313B: pipe2 (syscall-template.S:120)
==14379==    by 0x1A1B5F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A1B8579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A1B8774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A1B48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A11B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A11B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A025120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1432F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x1433449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x143352C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x1432C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x14366627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x69A0446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14379==    by 0x1428498D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14379==    by 0x142849DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14379==    by 0x4021223: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14379==    by 0x401C0E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14379==    by 0x401ED9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14379==    by 0x401EC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14379==    by 0x401F36B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14379==    by 0x401A37B: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18)
==14379== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14379== Open file descriptor 6:
==14379==    at 0x14AA334B: epoll_create1 (syscall-template.S:120)
==14379==    by 0x1A1B86FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A1B48AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14379==    by 0x1A11B0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A11B1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1A025120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14379==    by 0x1432F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x1433449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x143352C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x1432C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x14366627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14379==    by 0x69A0446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14379==    by 0x1428498D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14379==    by 0x142849DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14379==    by 0x4021223: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14379==    by 0x401C0E1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14379==    by 0x401ED9E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14379==    by 0x401EC01: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14379==    by 0x401F36B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14379==    by 0x401A37B: main (TestRunningMeshBasedCryptSimulationsTutorial.cpp:18)
==14379== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14379== 
==14379== HEAP SUMMARY:
==14379==     in use at exit: 126,480 bytes in 902 blocks
==14379==   total heap usage: 1,743,961 allocs, 1,743,059 frees, 189,678,075 bytes allocated
==14379== 
==14379== LEAK SUMMARY:
==14379==    definitely lost: 0 bytes in 0 blocks
==14379==    indirectly lost: 0 bytes in 0 blocks
==14379==      possibly lost: 0 bytes in 0 blocks
==14379==    still reachable: 11,981 bytes in 45 blocks
==14379==         suppressed: 114,499 bytes in 857 blocks
==14379== Reachable blocks (those to which a pointer was found) are not shown.
==14379== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==14379== 
==14379== For lists of detected and suppressed errors, rerun with: -s
==14379== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)