==14385== Memcheck, a memory error detector
==14385== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==14385== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==14385== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestRunningVertexBasedCryptSimulationsTutorial -malloc_debug -malloc_dump -memory_info
==14385== Parent PID: 13723
==14385== 
==14385== 
==14385== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==14385== Open file descriptor 10: /dev/shm/open_mpi.0000
==14385==    at 0x14A933B6: __open_nocancel (open64_nocancel.c:39)
==14385==    by 0x14A17943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==14385==    by 0x1A15589E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A155A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A154C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A154F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A024159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1432E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x1433349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x143342C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x1432B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x14365627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x699F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14385==    by 0x1428398D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14385==    by 0x142839DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14385==    by 0x4020783: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14385==    by 0x401B6B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14385==    by 0x401E36E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14385==    by 0x401E1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14385==    by 0x401E93B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14385==    by 0x401994B: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18)
==14385== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14385== Open file descriptor 9:
==14385==    at 0x14AA184B: eventfd (syscall-template.S:120)
==14385==    by 0x1A1B5188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A1B3395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A1B3704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A1B39F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A11A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A11A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A024120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1432E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x1433349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x143342C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x1432B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x14365627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x699F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14385==    by 0x1428398D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14385==    by 0x142839DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14385==    by 0x4020783: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14385==    by 0x401B6B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14385==    by 0x401E36E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14385==    by 0x401E1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14385==    by 0x401E93B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14385==    by 0x401994B: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18)
==14385== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14385== Open file descriptor 8:
==14385==    at 0x14A9213B: pipe2 (syscall-template.S:120)
==14385==    by 0x1A1B4F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A1B7579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A1B7774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A1B38AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A11A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A11A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A024120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1432E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x1433349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x143342C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x1432B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x14365627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x699F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14385==    by 0x1428398D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14385==    by 0x142839DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14385==    by 0x4020783: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14385==    by 0x401B6B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14385==    by 0x401E36E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14385==    by 0x401E1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14385==    by 0x401E93B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14385==    by 0x401994B: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18)
==14385== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14385== Open file descriptor 7:
==14385==    at 0x14A9213B: pipe2 (syscall-template.S:120)
==14385==    by 0x1A1B4F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A1B7579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A1B7774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A1B38AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A11A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A11A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A024120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1432E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x1433349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x143342C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x1432B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x14365627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x699F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14385==    by 0x1428398D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14385==    by 0x142839DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14385==    by 0x4020783: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14385==    by 0x401B6B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14385==    by 0x401E36E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14385==    by 0x401E1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14385==    by 0x401E93B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14385==    by 0x401994B: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18)
==14385== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14385== Open file descriptor 6:
==14385==    at 0x14AA234B: epoll_create1 (syscall-template.S:120)
==14385==    by 0x1A1B76FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A1B38AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14385==    by 0x1A11A0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A11A1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1A024120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14385==    by 0x1432E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x1433349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x143342C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x1432B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x14365627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14385==    by 0x699F446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14385==    by 0x1428398D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14385==    by 0x142839DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14385==    by 0x4020783: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==14385==    by 0x401B6B1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14385==    by 0x401E36E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14385==    by 0x401E1D1: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14385==    by 0x401E93B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14385==    by 0x401994B: main (TestRunningVertexBasedCryptSimulationsTutorial.cpp:18)
==14385== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14385== 
==14385== HEAP SUMMARY:
==14385==     in use at exit: 126,562 bytes in 903 blocks
==14385==   total heap usage: 1,595,318 allocs, 1,594,415 frees, 155,926,159 bytes allocated
==14385== 
==14385== LEAK SUMMARY:
==14385==    definitely lost: 0 bytes in 0 blocks
==14385==    indirectly lost: 0 bytes in 0 blocks
==14385==      possibly lost: 0 bytes in 0 blocks
==14385==    still reachable: 12,061 bytes in 46 blocks
==14385==         suppressed: 114,501 bytes in 857 blocks
==14385== Reachable blocks (those to which a pointer was found) are not shown.
==14385== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==14385== 
==14385== For lists of detected and suppressed errors, rerun with: -s
==14385== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)