==30513== Memcheck, a memory error detector
==30513== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==30513== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==30513== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestRunningVertexBasedSimulationsTutorial -malloc_debug -malloc_dump -memory_info
==30513== Parent PID: 15453
==30513== 
==30513== 
==30513== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==30513== Open file descriptor 10: /dev/shm/open_mpi.0000
==30513==    at 0x1332A3B6: __open_nocancel (open64_nocancel.c:39)
==30513==    by 0x132AE943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==30513==    by 0x1886989E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x18869A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x18868C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x18868F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x18738159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x1084F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x1085449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x108552C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x1084C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x10886627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0xF82C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30513==    by 0xEF5E98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30513==    by 0xEF5E9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30513==    by 0x402B673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==30513==    by 0x4025C91: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30513==    by 0x4028D8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30513==    by 0x4028B82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30513==    by 0x402939B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30513==    by 0x4023B0B: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==30513== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30513== Open file descriptor 9:
==30513==    at 0x1333884B: eventfd (syscall-template.S:120)
==30513==    by 0x188C9188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x188C7395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x188C7704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x188C79F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x1882E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x1882E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x18738120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x1084F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x1085449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x108552C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x1084C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x10886627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0xF82C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30513==    by 0xEF5E98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30513==    by 0xEF5E9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30513==    by 0x402B673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==30513==    by 0x4025C91: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30513==    by 0x4028D8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30513==    by 0x4028B82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30513==    by 0x402939B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30513==    by 0x4023B0B: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==30513== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30513== Open file descriptor 8:
==30513==    at 0x1332913B: pipe2 (syscall-template.S:120)
==30513==    by 0x188C8F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x188CB579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x188CB774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x188C78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x1882E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x1882E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x18738120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x1084F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x1085449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x108552C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x1084C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x10886627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0xF82C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30513==    by 0xEF5E98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30513==    by 0xEF5E9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30513==    by 0x402B673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==30513==    by 0x4025C91: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30513==    by 0x4028D8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30513==    by 0x4028B82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30513==    by 0x402939B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30513==    by 0x4023B0B: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==30513== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30513== Open file descriptor 7:
==30513==    at 0x1332913B: pipe2 (syscall-template.S:120)
==30513==    by 0x188C8F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x188CB579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x188CB774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x188C78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x1882E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x1882E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x18738120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x1084F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x1085449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x108552C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x1084C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x10886627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0xF82C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30513==    by 0xEF5E98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30513==    by 0xEF5E9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30513==    by 0x402B673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==30513==    by 0x4025C91: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30513==    by 0x4028D8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30513==    by 0x4028B82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30513==    by 0x402939B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30513==    by 0x4023B0B: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==30513== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30513== Open file descriptor 6:
==30513==    at 0x1333934B: epoll_create1 (syscall-template.S:120)
==30513==    by 0x188CB6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x188C78AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==30513==    by 0x1882E0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x1882E1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x18738120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==30513==    by 0x1084F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x1085449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x108552C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x1084C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0x10886627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==30513==    by 0xF82C446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==30513==    by 0xEF5E98D: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==30513==    by 0xEF5E9DB: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==30513==    by 0x402B673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==30513==    by 0x4025C91: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==30513==    by 0x4028D8E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==30513==    by 0x4028B82: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==30513==    by 0x402939B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==30513==    by 0x4023B0B: main (TestRunningVertexBasedSimulationsTutorial.cpp:19)
==30513== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==30513== 
==30513== HEAP SUMMARY:
==30513==     in use at exit: 106,825 bytes in 637 blocks
==30513==   total heap usage: 1,390,382 allocs, 1,389,745 frees, 71,222,551 bytes allocated
==30513== 
==30513== LEAK SUMMARY:
==30513==    definitely lost: 0 bytes in 0 blocks
==30513==    indirectly lost: 0 bytes in 0 blocks
==30513==      possibly lost: 0 bytes in 0 blocks
==30513==    still reachable: 12,101 bytes in 46 blocks
==30513==         suppressed: 94,724 bytes in 591 blocks
==30513== Reachable blocks (those to which a pointer was found) are not shown.
==30513== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==30513== 
==30513== For lists of detected and suppressed errors, rerun with: -s
==30513== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 36 from 36)