==15993== Memcheck, a memory error detector ==15993== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==15993== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==15993== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/linalg/test/TestChebyshevIteration -malloc_debug -malloc_dump -memory_info ==15993== Parent PID: 15799 ==15993== ==15993== ==15993== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==15993== Open file descriptor 10: /dev/shm/open_mpi.0000 ==15993== at 0x66343B6: __open_nocancel (open64_nocancel.c:39) ==15993== by 0x65B8943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==15993== by 0xA1B889E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA1B8A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA1B7C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA1B7F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA087159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0x8D3E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D4349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D442C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D3B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D75627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x51B5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15993== by 0x61F262C: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15993== by 0x61F267B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15993== by 0x40135CE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15993== by 0x400E7FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15993== by 0x401133A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15993== by 0x4011168: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15993== by 0x40118AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15993== by 0x400CBC3: main (TestChebyshevIteration.cpp:19) ==15993== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15993== Open file descriptor 9: ==15993== at 0x664284B: eventfd (syscall-template.S:120) ==15993== by 0xA658188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA656395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA656704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA6569F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA17D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA17D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA087120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0x8D3E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D4349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D442C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D3B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D75627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x51B5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15993== by 0x61F262C: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15993== by 0x61F267B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15993== by 0x40135CE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15993== by 0x400E7FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15993== by 0x401133A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15993== by 0x4011168: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15993== by 0x40118AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15993== by 0x400CBC3: main (TestChebyshevIteration.cpp:19) ==15993== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15993== Open file descriptor 8: ==15993== at 0x663313B: pipe2 (syscall-template.S:120) ==15993== by 0xA657F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA65A579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA65A774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA6568AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA17D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA17D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA087120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0x8D3E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D4349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D442C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D3B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D75627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x51B5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15993== by 0x61F262C: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15993== by 0x61F267B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15993== by 0x40135CE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15993== by 0x400E7FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15993== by 0x401133A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15993== by 0x4011168: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15993== by 0x40118AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15993== by 0x400CBC3: main (TestChebyshevIteration.cpp:19) ==15993== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15993== Open file descriptor 7: ==15993== at 0x663313B: pipe2 (syscall-template.S:120) ==15993== by 0xA657F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA65A579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA65A774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA6568AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA17D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA17D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA087120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0x8D3E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D4349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D442C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D3B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D75627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x51B5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15993== by 0x61F262C: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15993== by 0x61F267B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15993== by 0x40135CE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15993== by 0x400E7FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15993== by 0x401133A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15993== by 0x4011168: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15993== by 0x40118AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15993== by 0x400CBC3: main (TestChebyshevIteration.cpp:19) ==15993== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15993== Open file descriptor 6: ==15993== at 0x664334B: epoll_create1 (syscall-template.S:120) ==15993== by 0xA65A6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA6568AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==15993== by 0xA17D0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA17D1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0xA087120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==15993== by 0x8D3E0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D4349F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D442C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D3B18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x8D75627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==15993== by 0x51B5446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==15993== by 0x61F262C: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80) ==15993== by 0x61F267B: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88) ==15993== by 0x40135CE: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61) ==15993== by 0x400E7FF: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266) ==15993== by 0x401133A: CxxTest::TestRunner::runWorld() (TestRunner.h:43) ==15993== by 0x4011168: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==15993== by 0x40118AD: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==15993== by 0x400CBC3: main (TestChebyshevIteration.cpp:19) ==15993== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN15PetscSetupUtils15InitialisePetscEv fun:_ZN15PetscSetupUtils11CommonSetupEv fun:_ZN10PetscSetup10setUpWorldEv fun:_ZN7CxxTest20RealWorldDescription5setUpEv fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==15993== ==15993== HEAP SUMMARY: ==15993== in use at exit: 103,511 bytes in 641 blocks ==15993== total heap usage: 28,465 allocs, 27,824 frees, 24,679,658 bytes allocated ==15993== ==15993== LEAK SUMMARY: ==15993== definitely lost: 0 bytes in 0 blocks ==15993== indirectly lost: 0 bytes in 0 blocks ==15993== possibly lost: 0 bytes in 0 blocks ==15993== still reachable: 10,129 bytes in 40 blocks ==15993== suppressed: 93,382 bytes in 601 blocks ==15993== Reachable blocks (those to which a pointer was found) are not shown. ==15993== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==15993== ==15993== For lists of detected and suppressed errors, rerun with: -s ==15993== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)