==15968== Memcheck, a memory error detector
==15968== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==15968== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==15968== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestCellPopulationBoundaryConditions -malloc_debug -malloc_dump -memory_info
==15968== Parent PID: 15428
==15968== 
==15968== 
==15968== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==15968== Open file descriptor 10: /dev/shm/open_mpi.0000
==15968==    at 0x117A03B6: __open_nocancel (open64_nocancel.c:39)
==15968==    by 0x11724943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==15968==    by 0x1644D89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x1644DA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x1644CC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x1644CF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x1631C159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x11FA60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FAB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FAC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FA318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FDD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x12BBD446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15968==    by 0xEFA5610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15968==    by 0xEFA565F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15968==    by 0x4063174: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==15968==    by 0x405ADC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15968==    by 0x405E20E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15968==    by 0x405E032: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15968==    by 0x405E7DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15968==    by 0x4058DF9: main (TestCellPopulationBoundaryConditions.cpp:19)
==15968== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15968== Open file descriptor 9:
==15968==    at 0x117AE84B: eventfd (syscall-template.S:120)
==15968==    by 0x164AF188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164AD395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164AD704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164AD9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164120D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x164121E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x1631C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x11FA60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FAB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FAC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FA318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FDD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x12BBD446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15968==    by 0xEFA5610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15968==    by 0xEFA565F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15968==    by 0x4063174: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==15968==    by 0x405ADC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15968==    by 0x405E20E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15968==    by 0x405E032: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15968==    by 0x405E7DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15968==    by 0x4058DF9: main (TestCellPopulationBoundaryConditions.cpp:19)
==15968== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15968== Open file descriptor 8:
==15968==    at 0x1179F13B: pipe2 (syscall-template.S:120)
==15968==    by 0x164AEF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164B1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164B1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164AD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164120D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x164121E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x1631C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x11FA60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FAB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FAC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FA318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FDD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x12BBD446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15968==    by 0xEFA5610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15968==    by 0xEFA565F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15968==    by 0x4063174: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==15968==    by 0x405ADC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15968==    by 0x405E20E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15968==    by 0x405E032: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15968==    by 0x405E7DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15968==    by 0x4058DF9: main (TestCellPopulationBoundaryConditions.cpp:19)
==15968== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15968== Open file descriptor 7:
==15968==    at 0x1179F13B: pipe2 (syscall-template.S:120)
==15968==    by 0x164AEF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164B1579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164B1774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164AD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164120D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x164121E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x1631C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x11FA60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FAB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FAC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FA318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FDD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x12BBD446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15968==    by 0xEFA5610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15968==    by 0xEFA565F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15968==    by 0x4063174: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==15968==    by 0x405ADC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15968==    by 0x405E20E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15968==    by 0x405E032: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15968==    by 0x405E7DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15968==    by 0x4058DF9: main (TestCellPopulationBoundaryConditions.cpp:19)
==15968== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15968== Open file descriptor 5:
==15968==    at 0x117AF34B: epoll_create1 (syscall-template.S:120)
==15968==    by 0x164B16FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164AD8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15968==    by 0x164120D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x164121E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x1631C120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15968==    by 0x11FA60E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FAB49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FAC2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FA318F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x11FDD627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15968==    by 0x12BBD446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15968==    by 0xEFA5610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15968==    by 0xEFA565F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15968==    by 0x4063174: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==15968==    by 0x405ADC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15968==    by 0x405E20E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15968==    by 0x405E032: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15968==    by 0x405E7DB: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15968==    by 0x4058DF9: main (TestCellPopulationBoundaryConditions.cpp:19)
==15968== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15968== 
==15968== HEAP SUMMARY:
==15968==     in use at exit: 105,417 bytes in 646 blocks
==15968==   total heap usage: 50,464 allocs, 49,818 frees, 12,580,422 bytes allocated
==15968== 
==15968== LEAK SUMMARY:
==15968==    definitely lost: 0 bytes in 0 blocks
==15968==    indirectly lost: 0 bytes in 0 blocks
==15968==      possibly lost: 0 bytes in 0 blocks
==15968==    still reachable: 12,021 bytes in 45 blocks
==15968==         suppressed: 93,396 bytes in 601 blocks
==15968== Reachable blocks (those to which a pointer was found) are not shown.
==15968== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==15968== 
==15968== For lists of detected and suppressed errors, rerun with: -s
==15968== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)