==16072== Memcheck, a memory error detector ==16072== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al. ==16072== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info ==16072== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/global/test/TestExecutableSupport -malloc_debug -malloc_dump -memory_info ==16072== Parent PID: 16035 ==16072== ==16072== ==16072== FILE DESCRIPTORS: 11 open (6 inherited) at exit. ==16072== Open file descriptor 10: /dev/shm/open_mpi.0000 ==16072== at 0x4D883B6: __open_nocancel (open64_nocancel.c:39) ==16072== by 0x4D0C943: shm_open@@GLIBC_2.34 (shm_open.c:46) ==16072== by 0x71A289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x71A2A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x71A1C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x71A1F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x7071159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x4F0F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F1449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F152C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F0C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F46627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x5B6B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16072== by 0x491C043: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==16072== by 0x491DE0C: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==16072== by 0x400F548: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16072== by 0x400F938: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16072== by 0x400A9FC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16072== by 0x400D7E8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16072== by 0x400D6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16072== by 0x400D54B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16072== by 0x400D3B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16072== by 0x400DA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16072== by 0x40099B3: main (TestExecutableSupport.cpp:18) ==16072== { CoreError:FdNotClosed fun:__open_nocancel fun:shm_open@@GLIBC_2.34 fun:opal_shmem_posix_shm_open obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5 fun:opal_shmem_base_select fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16072== Open file descriptor 9: ==16072== at 0x4D9684B: eventfd (syscall-template.S:120) ==16072== by 0x7202188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x7200395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x7200704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x72009F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x71670D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x71671E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x7071120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x4F0F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F1449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F152C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F0C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F46627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x5B6B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16072== by 0x491C043: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==16072== by 0x491DE0C: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==16072== by 0x400F548: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16072== by 0x400F938: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16072== by 0x400A9FC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16072== by 0x400D7E8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16072== by 0x400D6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16072== by 0x400D54B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16072== by 0x400D3B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16072== by 0x400DA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16072== by 0x40099B3: main (TestExecutableSupport.cpp:18) ==16072== { CoreError:FdNotClosed fun:eventfd fun:evutil_eventfd_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:evthread_make_base_notifiable fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16072== Open file descriptor 8: ==16072== at 0x4D8713B: pipe2 (syscall-template.S:120) ==16072== by 0x7201F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x7204579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x7204774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x72008AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x71670D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x71671E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x7071120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x4F0F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F1449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F152C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F0C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F46627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x5B6B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16072== by 0x491C043: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==16072== by 0x491DE0C: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==16072== by 0x400F548: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16072== by 0x400F938: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16072== by 0x400A9FC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16072== by 0x400D7E8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16072== by 0x400D6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16072== by 0x400D54B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16072== by 0x400D3B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16072== by 0x400DA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16072== by 0x40099B3: main (TestExecutableSupport.cpp:18) ==16072== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16072== Open file descriptor 7: ==16072== at 0x4D8713B: pipe2 (syscall-template.S:120) ==16072== by 0x7201F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x7204579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x7204774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x72008AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x71670D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x71671E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x7071120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x4F0F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F1449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F152C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F0C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F46627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x5B6B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16072== by 0x491C043: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==16072== by 0x491DE0C: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==16072== by 0x400F548: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16072== by 0x400F938: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16072== by 0x400A9FC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16072== by 0x400D7E8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16072== by 0x400D6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16072== by 0x400D54B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16072== by 0x400D3B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16072== by 0x400DA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16072== by 0x40099B3: main (TestExecutableSupport.cpp:18) ==16072== { CoreError:FdNotClosed fun:pipe2 fun:evutil_make_internal_pipe_ fun:evsig_init_ obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16072== Open file descriptor 4: ==16072== at 0x4D9734B: epoll_create1 (syscall-template.S:120) ==16072== by 0x72046FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x72008AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1) ==16072== by 0x71670D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x71671E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x7071120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5) ==16072== by 0x4F0F0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F1449F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F152C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F0C18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x4F46627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7) ==16072== by 0x5B6B446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4) ==16072== by 0x491C043: ExecutableSupport::InitializePetsc(int*, char***) (ExecutableSupport.cpp:96) ==16072== by 0x491DE0C: ExecutableSupport::StandardStartup(int*, char***) (ExecutableSupport.cpp:312) ==16072== by 0x400F548: TestExecutableSupport::TestStaticMethods() (TestExecutableSupport.hpp:55) ==16072== by 0x400F938: TestDescription_TestExecutableSupport_TestStaticMethods::runTest() (TestExecutableSupport.cpp:30) ==16072== by 0x400A9FC: CxxTest::RealTestDescription::run() (RealDescriptions.cpp:96) ==16072== by 0x400D7E8: CxxTest::TestRunner::runTest(CxxTest::TestDescription&) (TestRunner.h:74) ==16072== by 0x400D6B9: CxxTest::TestRunner::runSuite(CxxTest::SuiteDescription&) (TestRunner.h:61) ==16072== by 0x400D54B: CxxTest::TestRunner::runWorld() (TestRunner.h:46) ==16072== by 0x400D3B0: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23) ==16072== by 0x400DA5D: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47) ==16072== by 0x40099B3: main (TestExecutableSupport.cpp:18) ==16072== { CoreError:FdNotClosed fun:epoll_create1 obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1 fun:event_base_new_with_config fun:opal_event_base_create fun:opal_event_init fun:opal_init fun:ompi_rte_init obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7 fun:ompi_mpi_instance_init fun:ompi_mpi_init fun:PMPI_Init_thread fun:PetscInitialize fun:_ZN17ExecutableSupport15InitializePetscEPiPPPc fun:_ZN17ExecutableSupport15StandardStartupEPiPPPc fun:_ZN21TestExecutableSupport17TestStaticMethodsEv fun:_ZN55TestDescription_TestExecutableSupport_TestStaticMethods7runTestEv fun:_ZN7CxxTest19RealTestDescription3runEv fun:_ZN7CxxTest10TestRunner7runTestERNS_15TestDescriptionE fun:_ZN7CxxTest10TestRunner8runSuiteERNS_16SuiteDescriptionE fun:_ZN7CxxTest10TestRunner8runWorldEv fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE fun:_ZN7CxxTest14ErrorFormatter3runEv fun:main } ==16072== ==16072== HEAP SUMMARY: ==16072== in use at exit: 101,977 bytes in 625 blocks ==16072== total heap usage: 25,049 allocs, 24,424 frees, 8,255,716 bytes allocated ==16072== ==16072== LEAK SUMMARY: ==16072== definitely lost: 0 bytes in 0 blocks ==16072== indirectly lost: 0 bytes in 0 blocks ==16072== possibly lost: 0 bytes in 0 blocks ==16072== still reachable: 10,121 bytes in 40 blocks ==16072== suppressed: 91,856 bytes in 585 blocks ==16072== Reachable blocks (those to which a pointer was found) are not shown. ==16072== To see them, rerun with: --leak-check=full --show-leak-kinds=all ==16072== ==16072== For lists of detected and suppressed errors, rerun with: -s ==16072== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)