==16982== Memcheck, a memory error detector
==16982== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==16982== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==16982== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/continuum_mechanics/test/TestMoreMechanics -malloc_debug -malloc_dump -memory_info
==16982== Parent PID: 16035
==16982== 
==16982== 
==16982== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==16982== Open file descriptor 10: /dev/shm/open_mpi.0000
==16982==    at 0xA9983B6: __open_nocancel (open64_nocancel.c:39)
==16982==    by 0xA91C943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==16982==    by 0x1035289E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x10352A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x10351C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x10351F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x10221159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0xCF7B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF8049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF812C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF7818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCFB2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0x52D7446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16982==    by 0xA49A610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16982==    by 0xA49A65F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16982==    by 0x4041BD4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16982==    by 0x403BC41: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16982==    by 0x403F19E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16982==    by 0x403EFC2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16982==    by 0x403F76B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16982==    by 0x4038949: main (TestMoreMechanics.cpp:19)
==16982== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16982== Open file descriptor 9:
==16982==    at 0xA9A684B: eventfd (syscall-template.S:120)
==16982==    by 0x107F2188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x107F0395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x107F0704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x107F09F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x103170D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x103171E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x10221120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0xCF7B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF8049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF812C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF7818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCFB2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0x52D7446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16982==    by 0xA49A610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16982==    by 0xA49A65F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16982==    by 0x4041BD4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16982==    by 0x403BC41: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16982==    by 0x403F19E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16982==    by 0x403EFC2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16982==    by 0x403F76B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16982==    by 0x4038949: main (TestMoreMechanics.cpp:19)
==16982== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16982== Open file descriptor 8:
==16982==    at 0xA99713B: pipe2 (syscall-template.S:120)
==16982==    by 0x107F1F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x107F4579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x107F4774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x107F08AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x103170D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x103171E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x10221120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0xCF7B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF8049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF812C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF7818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCFB2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0x52D7446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16982==    by 0xA49A610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16982==    by 0xA49A65F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16982==    by 0x4041BD4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16982==    by 0x403BC41: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16982==    by 0x403F19E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16982==    by 0x403EFC2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16982==    by 0x403F76B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16982==    by 0x4038949: main (TestMoreMechanics.cpp:19)
==16982== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16982== Open file descriptor 7:
==16982==    at 0xA99713B: pipe2 (syscall-template.S:120)
==16982==    by 0x107F1F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x107F4579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x107F4774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x107F08AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x103170D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x103171E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x10221120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0xCF7B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF8049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF812C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF7818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCFB2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0x52D7446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16982==    by 0xA49A610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16982==    by 0xA49A65F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16982==    by 0x4041BD4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16982==    by 0x403BC41: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16982==    by 0x403F19E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16982==    by 0x403EFC2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16982==    by 0x403F76B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16982==    by 0x4038949: main (TestMoreMechanics.cpp:19)
==16982== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16982== Open file descriptor 6:
==16982==    at 0xA9A734B: epoll_create1 (syscall-template.S:120)
==16982==    by 0x107F46FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x107F08AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==16982==    by 0x103170D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x103171E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0x10221120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==16982==    by 0xCF7B0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF8049F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF812C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCF7818F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0xCFB2627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==16982==    by 0x52D7446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==16982==    by 0xA49A610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==16982==    by 0xA49A65F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==16982==    by 0x4041BD4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==16982==    by 0x403BC41: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==16982==    by 0x403F19E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==16982==    by 0x403EFC2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==16982==    by 0x403F76B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==16982==    by 0x4038949: main (TestMoreMechanics.cpp:19)
==16982== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==16982== 
==16982== HEAP SUMMARY:
==16982==     in use at exit: 105,280 bytes in 628 blocks
==16982==   total heap usage: 386,777 allocs, 386,149 frees, 115,844,076 bytes allocated
==16982== 
==16982== LEAK SUMMARY:
==16982==    definitely lost: 0 bytes in 0 blocks
==16982==    indirectly lost: 0 bytes in 0 blocks
==16982==      possibly lost: 0 bytes in 0 blocks
==16982==    still reachable: 12,093 bytes in 45 blocks
==16982==         suppressed: 93,187 bytes in 583 blocks
==16982== Reachable blocks (those to which a pointer was found) are not shown.
==16982== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==16982== 
==16982== For lists of detected and suppressed errors, rerun with: -s
==16982== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 35 from 35)