==13581== Memcheck, a memory error detector
==13581== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==13581== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==13581== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestOdeBasedCellCycleModelsForCrypt -malloc_debug -malloc_dump -memory_info
==13581== Parent PID: 13578
==13581== 
==13581== 
==13581== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==13581== Open file descriptor 10: /dev/shm/open_mpi.0000
==13581==    at 0x132DE3B6: __open_nocancel (open64_nocancel.c:39)
==13581==    by 0x13262943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==13581==    by 0x1842389E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x18423A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x18422C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x18422F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x182F2159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x12B790E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12BB0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x6ADB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==13581==    by 0x12AD0610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==13581==    by 0x12AD065F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==13581==    by 0x40B3673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==13581==    by 0x40AA781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==13581==    by 0x40AE39E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==13581==    by 0x40AE1C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==13581==    by 0x40AE96B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==13581==    by 0x40A67D9: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19)
==13581== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==13581== Open file descriptor 9:
==13581==    at 0x132EC84B: eventfd (syscall-template.S:120)
==13581==    by 0x18485188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x18483395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x18483704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x184839F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x183E80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x183E81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x182F2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x12B790E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12BB0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x6ADB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==13581==    by 0x12AD0610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==13581==    by 0x12AD065F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==13581==    by 0x40B3673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==13581==    by 0x40AA781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==13581==    by 0x40AE39E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==13581==    by 0x40AE1C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==13581==    by 0x40AE96B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==13581==    by 0x40A67D9: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19)
==13581== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==13581== Open file descriptor 8:
==13581==    at 0x132DD13B: pipe2 (syscall-template.S:120)
==13581==    by 0x18484F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x18487579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x18487774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x184838AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x183E80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x183E81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x182F2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x12B790E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12BB0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x6ADB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==13581==    by 0x12AD0610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==13581==    by 0x12AD065F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==13581==    by 0x40B3673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==13581==    by 0x40AA781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==13581==    by 0x40AE39E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==13581==    by 0x40AE1C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==13581==    by 0x40AE96B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==13581==    by 0x40A67D9: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19)
==13581== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==13581== Open file descriptor 7:
==13581==    at 0x132DD13B: pipe2 (syscall-template.S:120)
==13581==    by 0x18484F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x18487579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x18487774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x184838AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x183E80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x183E81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x182F2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x12B790E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12BB0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x6ADB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==13581==    by 0x12AD0610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==13581==    by 0x12AD065F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==13581==    by 0x40B3673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==13581==    by 0x40AA781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==13581==    by 0x40AE39E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==13581==    by 0x40AE1C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==13581==    by 0x40AE96B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==13581==    by 0x40A67D9: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19)
==13581== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==13581== Open file descriptor 4:
==13581==    at 0x132ED34B: epoll_create1 (syscall-template.S:120)
==13581==    by 0x184876FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x184838AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==13581==    by 0x183E80D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x183E81E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x182F2120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==13581==    by 0x12B790E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7E49F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7F2C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12B7618F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x12BB0627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==13581==    by 0x6ADB446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==13581==    by 0x12AD0610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==13581==    by 0x12AD065F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==13581==    by 0x40B3673: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==13581==    by 0x40AA781: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==13581==    by 0x40AE39E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==13581==    by 0x40AE1C2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==13581==    by 0x40AE96B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==13581==    by 0x40A67D9: main (TestOdeBasedCellCycleModelsForCrypt.cpp:19)
==13581== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==13581== 
==13581== HEAP SUMMARY:
==13581==     in use at exit: 126,583 bytes in 903 blocks
==13581==   total heap usage: 842,408 allocs, 841,505 frees, 135,433,153 bytes allocated
==13581== 
==13581== LEAK SUMMARY:
==13581==    definitely lost: 0 bytes in 0 blocks
==13581==    indirectly lost: 0 bytes in 0 blocks
==13581==      possibly lost: 0 bytes in 0 blocks
==13581==    still reachable: 12,093 bytes in 46 blocks
==13581==         suppressed: 114,490 bytes in 857 blocks
==13581== Reachable blocks (those to which a pointer was found) are not shown.
==13581== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==13581== 
==13581== For lists of detected and suppressed errors, rerun with: -s
==13581== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)