==15779== Memcheck, a memory error detector
==15779== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==15779== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==15779== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/cell_based/test/TestSimulationsWithParabolicGrowingDomainPdeModifier -malloc_debug -malloc_dump -memory_info
==15779== Parent PID: 15428
==15779== 
==15779== 
==15779== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==15779== Open file descriptor 10: /dev/shm/open_mpi.0000
==15779==    at 0x135A53B6: __open_nocancel (open64_nocancel.c:39)
==15779==    by 0x13529943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==15779==    by 0x1886089E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x18860A71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x1885FC38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x1885FF97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x1872F159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x10BAC0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BB149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BB22C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BA918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BE3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0xFB89446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15779==    by 0xF2BB610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15779==    by 0xF2BB65F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15779==    by 0x402CCE3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15779==    by 0x4027201: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15779==    by 0x402A34E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15779==    by 0x402A172: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15779==    by 0x402A91B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15779==    by 0x4025239: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19)
==15779== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15779== Open file descriptor 9:
==15779==    at 0x135B384B: eventfd (syscall-template.S:120)
==15779==    by 0x188C0188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188BE395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188BE704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188BE9F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188250D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x188251E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x1872F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x10BAC0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BB149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BB22C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BA918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BE3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0xFB89446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15779==    by 0xF2BB610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15779==    by 0xF2BB65F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15779==    by 0x402CCE3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15779==    by 0x4027201: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15779==    by 0x402A34E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15779==    by 0x402A172: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15779==    by 0x402A91B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15779==    by 0x4025239: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19)
==15779== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15779== Open file descriptor 8:
==15779==    at 0x135A413B: pipe2 (syscall-template.S:120)
==15779==    by 0x188BFF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188C2579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188C2774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188BE8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188250D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x188251E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x1872F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x10BAC0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BB149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BB22C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BA918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BE3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0xFB89446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15779==    by 0xF2BB610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15779==    by 0xF2BB65F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15779==    by 0x402CCE3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15779==    by 0x4027201: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15779==    by 0x402A34E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15779==    by 0x402A172: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15779==    by 0x402A91B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15779==    by 0x4025239: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19)
==15779== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15779== Open file descriptor 7:
==15779==    at 0x135A413B: pipe2 (syscall-template.S:120)
==15779==    by 0x188BFF87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188C2579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188C2774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188BE8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188250D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x188251E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x1872F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x10BAC0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BB149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BB22C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BA918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BE3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0xFB89446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15779==    by 0xF2BB610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15779==    by 0xF2BB65F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15779==    by 0x402CCE3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15779==    by 0x4027201: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15779==    by 0x402A34E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15779==    by 0x402A172: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15779==    by 0x402A91B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15779==    by 0x4025239: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19)
==15779== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15779== Open file descriptor 6:
==15779==    at 0x135B434B: epoll_create1 (syscall-template.S:120)
==15779==    by 0x188C26FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188BE8AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==15779==    by 0x188250D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x188251E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x1872F120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==15779==    by 0x10BAC0E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BB149F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BB22C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BA918F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0x10BE3627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==15779==    by 0xFB89446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==15779==    by 0xF2BB610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==15779==    by 0xF2BB65F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==15779==    by 0x402CCE3: PetscSetup::setUpWorld() (FakePetscSetup.hpp:70)
==15779==    by 0x4027201: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==15779==    by 0x402A34E: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==15779==    by 0x402A172: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==15779==    by 0x402A91B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==15779==    by 0x4025239: main (TestSimulationsWithParabolicGrowingDomainPdeModifier.cpp:19)
==15779== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==15779== 
==15779== HEAP SUMMARY:
==15779==     in use at exit: 105,360 bytes in 642 blocks
==15779==   total heap usage: 4,861,140 allocs, 4,860,498 frees, 541,857,537 bytes allocated
==15779== 
==15779== LEAK SUMMARY:
==15779==    definitely lost: 0 bytes in 0 blocks
==15779==    indirectly lost: 0 bytes in 0 blocks
==15779==      possibly lost: 0 bytes in 0 blocks
==15779==    still reachable: 12,021 bytes in 45 blocks
==15779==         suppressed: 93,339 bytes in 597 blocks
==15779== Reachable blocks (those to which a pointer was found) are not shown.
==15779== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==15779== 
==15779== For lists of detected and suppressed errors, rerun with: -s
==15779== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)