==14067== Memcheck, a memory error detector
==14067== Copyright (C) 2002-2024, and GNU GPL'd, by Julian Seward et al.
==14067== Using Valgrind-3.26.0 and LibVEX; rerun with -h for copyright info
==14067== Command: /home/runner/work/Chaste/Chaste/Chaste/chaste-build-dir/crypt/test/TestVertexCryptBoundaryForce -malloc_debug -malloc_dump -memory_info
==14067== Parent PID: 14017
==14067== 
==14067== 
==14067== FILE DESCRIPTORS: 11 open (6 inherited) at exit.
==14067== Open file descriptor 10: /dev/shm/open_mpi.0000
==14067==    at 0x12E743B6: __open_nocancel (open64_nocancel.c:39)
==14067==    by 0x12DF8943: shm_open@@GLIBC_2.34 (shm_open.c:46)
==14067==    by 0x17C4A89E: opal_shmem_posix_shm_open (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17C4AA71: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17C49C38: ??? (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17C49F97: opal_shmem_base_select (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17B19159: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x138420E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x1384749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x138482C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x1383F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x13879627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x14459446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14067==    by 0x12A56610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14067==    by 0x12A5665F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14067==    by 0x40274E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==14067==    by 0x401FAC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14067==    by 0x4022ACE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14067==    by 0x40228F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14067==    by 0x402309B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14067==    by 0x401DAF9: main (TestVertexCryptBoundaryForce.cpp:19)
==14067== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:__open_nocancel
   fun:shm_open@@GLIBC_2.34
   fun:opal_shmem_posix_shm_open
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   obj:/usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5
   fun:opal_shmem_base_select
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14067== Open file descriptor 9:
==14067==    at 0x12E8284B: eventfd (syscall-template.S:120)
==14067==    by 0x17CAA188: evutil_eventfd_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17CA8395: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17CA8704: evthread_make_base_notifiable (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17CA89F1: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17C0F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17C0F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17B19120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x138420E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x1384749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x138482C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x1383F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x13879627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x14459446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14067==    by 0x12A56610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14067==    by 0x12A5665F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14067==    by 0x40274E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==14067==    by 0x401FAC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14067==    by 0x4022ACE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14067==    by 0x40228F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14067==    by 0x402309B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14067==    by 0x401DAF9: main (TestVertexCryptBoundaryForce.cpp:19)
==14067== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:eventfd
   fun:evutil_eventfd_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:evthread_make_base_notifiable
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14067== Open file descriptor 8:
==14067==    at 0x12E7313B: pipe2 (syscall-template.S:120)
==14067==    by 0x17CA9F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17CAC579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17CAC774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17CA88AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17C0F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17C0F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17B19120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x138420E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x1384749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x138482C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x1383F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x13879627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x14459446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14067==    by 0x12A56610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14067==    by 0x12A5665F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14067==    by 0x40274E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==14067==    by 0x401FAC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14067==    by 0x4022ACE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14067==    by 0x40228F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14067==    by 0x402309B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14067==    by 0x401DAF9: main (TestVertexCryptBoundaryForce.cpp:19)
==14067== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14067== Open file descriptor 7:
==14067==    at 0x12E7313B: pipe2 (syscall-template.S:120)
==14067==    by 0x17CA9F87: evutil_make_internal_pipe_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17CAC579: evsig_init_ (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17CAC774: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17CA88AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17C0F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17C0F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17B19120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x138420E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x1384749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x138482C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x1383F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x13879627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x14459446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14067==    by 0x12A56610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14067==    by 0x12A5665F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14067==    by 0x40274E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==14067==    by 0x401FAC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14067==    by 0x4022ACE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14067==    by 0x40228F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14067==    by 0x402309B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14067==    by 0x401DAF9: main (TestVertexCryptBoundaryForce.cpp:19)
==14067== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:pipe2
   fun:evutil_make_internal_pipe_
   fun:evsig_init_
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14067== Open file descriptor 6:
==14067==    at 0x12E8334B: epoll_create1 (syscall-template.S:120)
==14067==    by 0x17CAC6FA: ??? (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17CA88AA: event_base_new_with_config (in /usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1)
==14067==    by 0x17C0F0D7: opal_event_base_create (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17C0F1E8: opal_event_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x17B19120: opal_init (in /usr/lib/x86_64-linux-gnu/libopen-pal.so.80.0.5)
==14067==    by 0x138420E7: ompi_rte_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x1384749F: ??? (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x138482C3: ompi_mpi_instance_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x1383F18F: ompi_mpi_init (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x13879627: PMPI_Init_thread (in /usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7)
==14067==    by 0x14459446: PetscInitialize (in /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.24.4)
==14067==    by 0x12A56610: PetscSetupUtils::InitialisePetsc() (PetscSetupUtils.cpp:80)
==14067==    by 0x12A5665F: PetscSetupUtils::CommonSetup() (PetscSetupUtils.cpp:88)
==14067==    by 0x40274E4: PetscSetup::setUpWorld() (PetscSetupAndFinalize.hpp:61)
==14067==    by 0x401FAC1: CxxTest::RealWorldDescription::setUp() (RealDescriptions.cpp:266)
==14067==    by 0x4022ACE: CxxTest::TestRunner::runWorld() (TestRunner.h:43)
==14067==    by 0x40228F2: CxxTest::TestRunner::runAllTests(CxxTest::TestListener&) (TestRunner.h:23)
==14067==    by 0x402309B: CxxTest::ErrorFormatter::run() (ErrorFormatter.h:47)
==14067==    by 0x401DAF9: main (TestVertexCryptBoundaryForce.cpp:19)
==14067== 
{
   <insert_a_suppression_name_here>
   CoreError:FdNotClosed
   fun:epoll_create1
   obj:/usr/lib/x86_64-linux-gnu/libevent_core-2.1.so.7.0.1
   fun:event_base_new_with_config
   fun:opal_event_base_create
   fun:opal_event_init
   fun:opal_init
   fun:ompi_rte_init
   obj:/usr/lib/x86_64-linux-gnu/libmpi.so.40.40.7
   fun:ompi_mpi_instance_init
   fun:ompi_mpi_init
   fun:PMPI_Init_thread
   fun:PetscInitialize
   fun:_ZN15PetscSetupUtils15InitialisePetscEv
   fun:_ZN15PetscSetupUtils11CommonSetupEv
   fun:_ZN10PetscSetup10setUpWorldEv
   fun:_ZN7CxxTest20RealWorldDescription5setUpEv
   fun:_ZN7CxxTest10TestRunner8runWorldEv
   fun:_ZN7CxxTest10TestRunner11runAllTestsERNS_12TestListenerE
   fun:_ZN7CxxTest14ErrorFormatter3runEv
   fun:main
}
==14067== 
==14067== HEAP SUMMARY:
==14067==     in use at exit: 128,986 bytes in 934 blocks
==14067==   total heap usage: 36,767 allocs, 35,833 frees, 11,230,226 bytes allocated
==14067== 
==14067== LEAK SUMMARY:
==14067==    definitely lost: 0 bytes in 0 blocks
==14067==    indirectly lost: 0 bytes in 0 blocks
==14067==      possibly lost: 0 bytes in 0 blocks
==14067==    still reachable: 12,029 bytes in 45 blocks
==14067==         suppressed: 116,957 bytes in 889 blocks
==14067== Reachable blocks (those to which a pointer was found) are not shown.
==14067== To see them, rerun with: --leak-check=full --show-leak-kinds=all
==14067== 
==14067== For lists of detected and suppressed errors, rerun with: -s
==14067== ERROR SUMMARY: 5 errors from 5 contexts (suppressed: 33 from 33)