File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3606ms, 84.71% of 4257ms total Dropped 472 nodes (cum <= 21.29ms) flat flat% sum% cum cum% 0 0% 0% 4249ms 99.81% __libc_start_call_main 0 0% 0% 4249ms 99.81% __libc_start_main_impl 0 0% 0% 4249ms 99.81% _start 0 0% 0% 4246ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4246ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4246ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4246ms 99.74% main 0 0% 0% 4205ms 98.78% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4205ms 98.78% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4205ms 98.78% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 4198ms 98.61% AbstractCardiacProblem::Solve 1ms 0.023% 0.023% 4182ms 98.24% AbstractDynamicLinearPdeSolver::Solve 10ms 0.23% 0.26% 2217ms 52.08% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.28% 1669ms 39.21% LinearSystem::Solve 0 0% 0.28% 1617ms 37.98% KSPSolve 4ms 0.094% 0.38% 1617ms 37.98% KSPSolve_Private 0 0% 0.38% 1572ms 36.93% KSPSolve_SYMMLQ 30ms 0.7% 1.08% 1295ms 30.42% AbstractCardiacCell::ComputeExceptVoltage 12ms 0.28% 1.36% 1122ms 26.36% AbstractOneStepIvpOdeSolver::InternalSolve 55ms 1.29% 2.65% 961ms 22.57% EulerIvpOdeSolver::CalculateNextYValue 3ms 0.07% 2.72% 956ms 22.46% PCApply 0 0% 2.72% 944ms 22.18% PCApply_BJacobi_Singleblock 260ms 6.11% 8.83% 890ms 20.91% CellLuoRudy1991FromCellML::EvaluateYDerivatives 368ms 8.64% 17.48% 799ms 18.77% __GI___exp 0 0% 17.48% 789ms 18.53% KSPSolve_PREONLY (partial-inline) 1ms 0.023% 17.50% 743ms 17.45% PCApply_ICC 2ms 0.047% 17.55% 742ms 17.43% MatSolve 731ms 17.17% 34.72% 735ms 17.27% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 34.72% 716ms 16.82% KSP_PCApply.lto_priv.18 21ms 0.49% 35.21% 696ms 16.35% AbstractCardiacTissue::UpdateCaches (inline) 264ms 6.20% 41.41% 653ms 15.34% CellLuoRudy1991FromCellML::GetIIonic 4ms 0.094% 41.51% 453ms 10.64% MatMult 5ms 0.12% 41.63% 443ms 10.41% MatMult_SeqAIJ 434ms 10.19% 51.82% 442ms 10.38% MatMult_SeqAIJ_Inode (inline) 384ms 9.02% 60.84% 414ms 9.73% __ieee754_exp_fma 3ms 0.07% 60.91% 328ms 7.70% KSPConvergedDefault 0 0% 60.91% 311ms 7.31% KSP_PCApply (partial-inline) 49ms 1.15% 62.06% 252ms 5.92% BidomainSolver::SetupLinearSystem 103ms 2.42% 64.48% 176ms 4.13% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.023% 64.51% 159ms 3.74% std::pow (inline) 14ms 0.33% 64.83% 158ms 3.71% __pow 19ms 0.45% 65.28% 142ms 3.34% __ieee754_pow_fma 2ms 0.047% 65.33% 117ms 2.75% MatNullSpaceRemove 0 0% 65.33% 99ms 2.33% VecDuplicate 19ms 0.45% 65.77% 93ms 2.18% MPI_Wtime 90ms 2.11% 67.89% 90ms 2.11% ddot_ 0 0% 67.89% 76ms 1.79% VecMDot 5ms 0.12% 68.01% 76ms 1.79% VecMXDot_Private 0 0% 68.01% 74ms 1.74% VecDot 1ms 0.023% 68.03% 74ms 1.74% __GI___clock_gettime 73ms 1.71% 69.74% 73ms 1.71% [[vdso]] 73ms 1.71% 71.46% 73ms 1.71% log_inline (inline) 15ms 0.35% 71.81% 68ms 1.60% PetscLogEventBeginDefault 33ms 0.78% 72.59% 65ms 1.53% TimeStepper::TimeStepper 0 0% 72.59% 63ms 1.48% VecDot_Seq 1ms 0.023% 72.61% 63ms 1.48% VecXDot_Seq_Private.constprop.0 8ms 0.19% 72.80% 62ms 1.46% PetscLogEventEndDefault 7ms 0.16% 72.96% 59ms 1.39% VecCopy 1ms 0.023% 72.99% 55ms 1.29% VecNorm 0 0% 72.99% 52ms 1.22% VecDuplicate_Seq 2ms 0.047% 73.03% 50ms 1.17% VecDestroy 37ms 0.87% 73.90% 49ms 1.15% AbstractOneStepIvpOdeSolver::Solve 1ms 0.023% 73.93% 49ms 1.15% VecNorm_Seq 3ms 0.07% 74.00% 47ms 1.10% VecAXPY 1ms 0.023% 74.02% 47ms 1.10% VecDuplicate_MPI 46ms 1.08% 75.10% 47ms 1.10% exp_inline (inline) 46ms 1.08% 76.18% 46ms 1.08% [libchaste_heart.so] 45ms 1.06% 77.24% 45ms 1.06% TimeStepper::CalculateNextTime 44ms 1.03% 78.27% 45ms 1.06% VecMDot_Seq 0 0% 78.27% 43ms 1.01% VecCreate 0 0% 78.27% 40ms 0.94% AbstractBidomainSolver::FinaliseLinearSystem 5ms 0.12% 78.39% 40ms 0.94% PetscMallocA 39ms 0.92% 79.30% 40ms 0.94% __ieee754_log_fma 40ms 0.94% 80.24% 40ms 0.94% __memcpy_avx_unaligned_erms 3ms 0.07% 80.31% 39ms 0.92% VecMAXPY 10ms 0.23% 80.55% 38ms 0.89% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 80.55% 38ms 0.89% PetscMemcpy (inline) 0 0% 80.55% 37ms 0.87% CxxTest::RealWorldDescription::setUp 0 0% 80.55% 37ms 0.87% PMPI_Init_thread 0 0% 80.55% 37ms 0.87% PetscInitialize 0 0% 80.55% 37ms 0.87% PetscSetup::setUpWorld 0 0% 80.55% 37ms 0.87% PetscSetupUtils::CommonSetup 0 0% 80.55% 37ms 0.87% PetscSetupUtils::InitialisePetsc 3ms 0.07% 80.62% 37ms 0.87% PetscTimeSubtract (inline) 0 0% 80.62% 37ms 0.87% VecNorm_MPI 0 0% 80.62% 37ms 0.87% VecNorm_MPI_Default.constprop.0 0 0% 80.62% 37ms 0.87% ompi_mpi_init 5ms 0.12% 80.74% 37ms 0.87% std::__cxx11::basic_string::basic_string 4ms 0.094% 80.83% 35ms 0.82% PetscMallocAlign 28ms 0.66% 81.49% 34ms 0.8% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 11ms 0.26% 81.75% 34ms 0.8% TimeStepper::AdvanceOneTimeStep 10ms 0.23% 81.98% 33ms 0.78% top12 (inline) 1ms 0.023% 82.01% 31ms 0.73% 24ms 0.56% 82.57% 31ms 0.73% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 82.57% 31ms 0.73% VecCopy_Seq (partial-inline) 1ms 0.023% 82.59% 29ms 0.68% VecSetType 9ms 0.21% 82.80% 28ms 0.66% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 82.80% 27ms 0.63% VecAXPY_Seq 5ms 0.12% 82.92% 26ms 0.61% PetscHeaderCreate_Private 25ms 0.59% 83.51% 25ms 0.59% asuint64 (inline) 0 0% 83.51% 24ms 0.56% VecCreate_Seq 24ms 0.56% 84.07% 24ms 0.56% daxpy_ 0 0% 84.07% 24ms 0.56% orte_init 24ms 0.56% 84.64% 24ms 0.56% std::vector::operator[] (inline) 3ms 0.07% 84.71% 23ms 0.54% VecCreate_MPI_Private