File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3730ms, 87.97% of 4240ms total Dropped 458 nodes (cum <= 21.20ms) flat flat% sum% cum cum% 0 0% 0% 4233ms 99.83% __libc_start_call_main 0 0% 0% 4233ms 99.83% __libc_start_main_impl 0 0% 0% 4233ms 99.83% _start 0 0% 0% 4230ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4230ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4230ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4230ms 99.76% main 0 0% 0% 4191ms 98.84% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4190ms 98.82% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4190ms 98.82% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4183ms 98.66% AbstractCardiacProblem::Solve 2ms 0.047% 0.071% 4169ms 98.33% AbstractDynamicLinearPdeSolver::Solve 19ms 0.45% 0.52% 2194ms 51.75% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.54% 1590ms 37.50% LinearSystem::Solve 0 0% 0.54% 1540ms 36.32% KSPSolve 3ms 0.071% 0.61% 1540ms 36.32% KSPSolve_Private 2ms 0.047% 0.66% 1492ms 35.19% KSPSolve_SYMMLQ 33ms 0.78% 1.44% 1233ms 29.08% AbstractCardiacCell::ComputeExceptVoltage 34ms 0.8% 2.24% 1061ms 25.02% AbstractOneStepIvpOdeSolver::InternalSolve 4ms 0.094% 2.33% 923ms 21.77% PCApply 1ms 0.024% 2.36% 913ms 21.53% PCApply_BJacobi_Singleblock 64ms 1.51% 3.87% 874ms 20.61% EulerIvpOdeSolver::CalculateNextYValue 0 0% 3.87% 798ms 18.82% KSPSolve_PREONLY (partial-inline) 208ms 4.91% 8.77% 795ms 18.75% CellLuoRudy1991FromCellML::EvaluateYDerivatives 26ms 0.61% 9.39% 787ms 18.56% AbstractCardiacTissue::UpdateCaches (inline) 344ms 8.11% 17.50% 743ms 17.52% __GI___exp 1ms 0.024% 17.52% 742ms 17.50% PCApply_ICC 3ms 0.071% 17.59% 741ms 17.48% MatSolve 728ms 17.17% 34.76% 733ms 17.29% MatSolve_SeqSBAIJ_1_NaturalOrdering 258ms 6.08% 40.85% 719ms 16.96% CellLuoRudy1991FromCellML::GetIIonic 0 0% 40.85% 657ms 15.50% KSP_PCApply.lto_priv.18 1ms 0.024% 40.87% 487ms 11.49% MatMult 10ms 0.24% 41.11% 474ms 11.18% MatMult_SeqAIJ (partial-inline) 459ms 10.83% 51.93% 474ms 11.18% MatMult_SeqAIJ_Inode (inline) 304ms 7.17% 59.10% 375ms 8.84% __ieee754_exp_fma 0 0% 59.10% 338ms 7.97% KSPConvergedDefault 0 0% 59.10% 333ms 7.85% KSP_PCApply (partial-inline) 57ms 1.34% 60.45% 323ms 7.62% BidomainSolver::SetupLinearSystem 1ms 0.024% 60.47% 245ms 5.78% std::pow (inline) 25ms 0.59% 61.06% 244ms 5.75% __pow 21ms 0.5% 61.56% 219ms 5.17% __ieee754_pow_fma 1ms 0.024% 61.58% 123ms 2.90% MatNullSpaceRemove 109ms 2.57% 64.15% 109ms 2.57% log_inline (inline) 57ms 1.34% 65.50% 106ms 2.50% CellLuoRudy1991FromCellML::VerifyStateVariables 25ms 0.59% 66.08% 98ms 2.31% MPI_Wtime 0 0% 66.08% 81ms 1.91% VecDuplicate 35ms 0.83% 66.91% 77ms 1.82% TimeStepper::TimeStepper 73ms 1.72% 68.63% 77ms 1.82% exp_inline (inline) 14ms 0.33% 68.96% 76ms 1.79% PetscLogEventEndDefault 75ms 1.77% 70.73% 75ms 1.77% ddot_ 0 0% 70.73% 73ms 1.72% VecMDot 4ms 0.094% 70.83% 73ms 1.72% VecMXDot_Private 2ms 0.047% 70.87% 73ms 1.72% __GI___clock_gettime 71ms 1.67% 72.55% 71ms 1.67% [[vdso]] 47ms 1.11% 73.66% 64ms 1.51% top12 (inline) 15ms 0.35% 74.01% 59ms 1.39% PetscLogEventBeginDefault 18ms 0.42% 74.43% 56ms 1.32% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 74.43% 55ms 1.30% VecDot 15ms 0.35% 74.79% 53ms 1.25% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 74.79% 53ms 1.25% AbstractBidomainSolver::FinaliseLinearSystem 7ms 0.17% 74.95% 52ms 1.23% VecCopy 2ms 0.047% 75.00% 52ms 1.23% VecDuplicate_MPI 51ms 1.20% 76.20% 51ms 1.20% TimeStepper::CalculateNextTime 0 0% 76.20% 50ms 1.18% VecDot_Seq 0 0% 76.20% 50ms 1.18% VecXDot_Seq_Private.constprop.0 0 0% 76.20% 49ms 1.16% VecMAXPY 3ms 0.071% 76.27% 47ms 1.11% VecAXPY 42ms 0.99% 77.26% 45ms 1.06% VecMDot_Seq 44ms 1.04% 78.30% 44ms 1.04% [libchaste_heart.so] 19ms 0.45% 78.75% 43ms 1.01% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 2ms 0.047% 78.80% 40ms 0.94% VecNorm 40ms 0.94% 79.74% 40ms 0.94% asuint64 (inline) 5ms 0.12% 79.86% 38ms 0.9% VecCreate 6ms 0.14% 80.00% 36ms 0.85% PetscMallocA 4ms 0.094% 80.09% 36ms 0.85% VecDestroy 0 0% 80.09% 35ms 0.83% CxxTest::RealWorldDescription::setUp 0 0% 80.09% 35ms 0.83% PMPI_Init_thread 0 0% 80.09% 35ms 0.83% PetscInitialize 0 0% 80.09% 35ms 0.83% PetscSetup::setUpWorld 0 0% 80.09% 35ms 0.83% PetscSetupUtils::CommonSetup 0 0% 80.09% 35ms 0.83% PetscSetupUtils::InitialisePetsc 0 0% 80.09% 35ms 0.83% ompi_mpi_init 27ms 0.64% 80.73% 34ms 0.8% AbstractParameterisedSystem::SetAnyVariable 0 0% 80.73% 34ms 0.8% VecNorm_Seq 19ms 0.45% 81.18% 33ms 0.78% AbstractOneStepIvpOdeSolver::Solve 16ms 0.38% 81.56% 32ms 0.75% TimeStepper::AdvanceOneTimeStep 31ms 0.73% 82.29% 31ms 0.73% VecMAXPY_Seq 25ms 0.59% 82.88% 30ms 0.71% AbstractParameterisedSystem::GetAnyVariable 0 0% 82.88% 30ms 0.71% PetscMallocAlign 30ms 0.71% 83.58% 30ms 0.71% __ieee754_log_fma 30ms 0.71% 84.29% 30ms 0.71% __memcpy_avx_unaligned_erms 0 0% 84.29% 29ms 0.68% VecDuplicate_Seq 1ms 0.024% 84.32% 26ms 0.61% 26ms 0.61% 84.93% 26ms 0.61% DistributedVector::Iterator::operator!= 25ms 0.59% 85.52% 25ms 0.59% DistributedVector::Stripe::operator[] (inline) 0 0% 85.52% 25ms 0.59% VecAXPY_Seq 24ms 0.57% 86.08% 24ms 0.57% RegularStimulus::GetStimulus 24ms 0.57% 86.65% 24ms 0.57% [libm.so.6] 23ms 0.54% 87.19% 23ms 0.54% DistributedVector::End 9ms 0.21% 87.41% 22ms 0.52% AbstractCardiacCell::GetVoltage (partial-inline) 2ms 0.047% 87.45% 22ms 0.52% __GI___libc_malloc 22ms 0.52% 87.97% 22ms 0.52% daxpy_ 0 0% 87.97% 22ms 0.52% orte_init