File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109362ms, 91.76% of 119180ms total Dropped 1137 nodes (cum <= 595.90ms) flat flat% sum% cum cum% 0 0% 0% 119166ms 100% __libc_start_call_main 0 0% 0% 119166ms 100% __libc_start_main_impl 0 0% 0% 119166ms 100% _start 0 0% 0% 119163ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119163ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119163ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119163ms 100% main 0 0% 0% 119132ms 100% AbstractConvergenceTester::Converge 0 0% 0% 119132ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119132ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119132ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119132ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119132ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 3ms 0.0025% 0.0025% 117886ms 98.91% AbstractCardiacProblem::Solve 7ms 0.0059% 0.0084% 117146ms 98.29% AbstractDynamicLinearPdeSolver::Solve 13ms 0.011% 0.019% 65586ms 55.03% LinearSystem::Solve 0 0% 0.019% 65099ms 54.62% KSPSolve 7ms 0.0059% 0.025% 65099ms 54.62% KSPSolve_Private 12ms 0.01% 0.035% 64635ms 54.23% KSPSolve_SYMMLQ 208ms 0.17% 0.21% 42633ms 35.77% AbstractCardiacTissue::SolveCellSystems 6ms 0.005% 0.21% 37192ms 31.21% PCApply 4ms 0.0034% 0.22% 37180ms 31.20% PCApply_BJacobi_Singleblock 1ms 0.00084% 0.22% 34616ms 29.05% KSPSolve_PREONLY (partial-inline) 3ms 0.0025% 0.22% 33466ms 28.08% PCApply_ICC 3ms 0.0025% 0.22% 33463ms 28.08% MatSolve 32959ms 27.65% 27.88% 33460ms 28.08% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1326ms 1.11% 28.99% 32669ms 27.41% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 3ms 0.0025% 28.99% 32053ms 26.89% KSP_PCApply.lto_priv.18 6960ms 5.84% 34.83% 28311ms 23.75% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 9ms 0.0076% 34.84% 21775ms 18.27% MatMult 217ms 0.18% 35.02% 21766ms 18.26% MatMult_SeqAIJ (partial-inline) 21231ms 17.81% 52.84% 21763ms 18.26% MatMult_SeqAIJ_Inode (inline) 1946ms 1.63% 54.47% 14629ms 12.27% CardiacNewtonSolver::Solve 310ms 0.26% 54.73% 9121ms 7.65% AbstractCardiacTissue::UpdateCaches (inline) 4362ms 3.66% 58.39% 8617ms 7.23% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1951ms 1.64% 60.03% 8598ms 7.21% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1157ms 0.97% 61.00% 7828ms 6.57% BidomainSolver::SetupLinearSystem 1110ms 0.93% 61.93% 7363ms 6.18% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00084% 61.93% 7054ms 5.92% KSP_PCApply (partial-inline) 9ms 0.0076% 61.94% 6441ms 5.40% KSPConvergedDefault 5996ms 5.03% 66.97% 5996ms 5.03% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3954ms 3.32% 70.29% 3987ms 3.35% __ieee754_log_fma 0 0% 70.29% 3680ms 3.09% boost::numeric::ublas::norm_inf (inline) 2478ms 2.08% 72.37% 3680ms 3.09% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.37% 3680ms 3.09% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.37% 3680ms 3.09% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 5ms 0.0042% 72.37% 3336ms 2.80% MatNullSpaceRemove 30ms 0.025% 72.40% 3215ms 2.70% std::pow (inline) 381ms 0.32% 72.72% 3183ms 2.67% __pow 3159ms 2.65% 75.37% 3159ms 2.65% __memcpy_avx_unaligned_erms 0 0% 75.37% 3122ms 2.62% PetscMemcpy (inline) 1760ms 1.48% 76.84% 2883ms 2.42% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 372ms 0.31% 77.15% 2796ms 2.35% __ieee754_pow_fma 2687ms 2.25% 79.41% 2687ms 2.25% ddot_ 15ms 0.013% 79.42% 2651ms 2.22% VecCopy 4ms 0.0034% 79.43% 2633ms 2.21% VecCopy_Seq (partial-inline) 15ms 0.013% 79.44% 2403ms 2.02% VecAXPY 5ms 0.0042% 79.44% 2388ms 2.00% VecAXPY_Seq 2374ms 1.99% 81.43% 2374ms 1.99% daxpy_ 3ms 0.0025% 81.44% 2134ms 1.79% VecDot 2ms 0.0017% 81.44% 2131ms 1.79% VecDot_Seq 2ms 0.0017% 81.44% 2129ms 1.79% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.44% 2094ms 1.76% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.44% 1953ms 1.64% VecMDot 9ms 0.0076% 81.45% 1951ms 1.64% VecMXDot_Private 1933ms 1.62% 83.07% 1938ms 1.63% VecMDot_Seq 23ms 0.019% 83.09% 1748ms 1.47% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1586ms 1.33% 84.42% 1640ms 1.38% exp_inline (inline) 1460ms 1.23% 85.65% 1460ms 1.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 85.65% 1432ms 1.20% AbstractFeAssemblerInterface::AssembleMatrix (inline) 6ms 0.005% 85.65% 1378ms 1.16% VecMAXPY 1364ms 1.14% 86.80% 1372ms 1.15% VecMAXPY_Seq 7ms 0.0059% 86.80% 1195ms 1.00% boost::numeric::ublas::matrix_assign (inline) 225ms 0.19% 86.99% 1185ms 0.99% boost::numeric::ublas::indexing_matrix_assign 0 0% 86.99% 1117ms 0.94% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.99% 1117ms 0.94% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.99% 1117ms 0.94% boost_numeric_ublas_abs (inline) 1117ms 0.94% 87.93% 1117ms 0.94% std::abs (inline) 1105ms 0.93% 88.86% 1105ms 0.93% __memset_avx2_unaligned_erms 0 0% 88.86% 1098ms 0.92% CuboidMeshConstructor::Construct 0 0% 88.86% 1097ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00084% 88.86% 1097ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 0 0% 88.86% 1092ms 0.92% PetscMemzero (inline) 829ms 0.7% 89.55% 1081ms 0.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 4ms 0.0034% 89.56% 1021ms 0.86% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00084% 89.56% 1014ms 0.85% Element::Element 7ms 0.0059% 89.56% 977ms 0.82% KSP_RemoveNullSpace (inline) 2ms 0.0017% 89.56% 964ms 0.81% AbstractTetrahedralElement::AbstractTetrahedralElement 10ms 0.0084% 89.57% 938ms 0.79% boost::numeric::ublas::c_matrix::c_matrix (inline) 6ms 0.005% 89.58% 933ms 0.78% BidomainAssembler::ComputeMatrixTerm 3ms 0.0025% 89.58% 924ms 0.78% VecDuplicate 6ms 0.005% 89.59% 817ms 0.69% VecScale 0 0% 89.59% 811ms 0.68% VecScale_Seq 2ms 0.0017% 89.59% 810ms 0.68% VecNorm 809ms 0.68% 90.27% 809ms 0.68% dscal_ 1ms 0.00084% 90.27% 800ms 0.67% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 90.27% 799ms 0.67% VecNorm_Seq 235ms 0.2% 90.46% 796ms 0.67% AbstractBidomainSolver::CheckCompatibilityCondition 16ms 0.013% 90.48% 790ms 0.66% PetscMallocA 784ms 0.66% 91.14% 784ms 0.66% [libchaste_heart.so] 7ms 0.0059% 91.14% 774ms 0.65% PetscMallocAlign (partial-inline) 739ms 0.62% 91.76% 739ms 0.62% log_inline (inline) 1ms 0.00084% 91.76% 677ms 0.57% BidomainProblem::WriteOneStep 0 0% 91.76% 662ms 0.56% AbstractFeAssemblerInterface::Assemble (inline) 0 0% 91.76% 608ms 0.51% boost::numeric::ublas::matrix_slice::operator= (inline)