File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3802ms, 88.58% of 4292ms total Dropped 400 nodes (cum <= 21.46ms) flat flat% sum% cum cum% 0 0% 0% 4284ms 99.81% __libc_start_call_main 0 0% 0% 4284ms 99.81% __libc_start_main_impl 0 0% 0% 4284ms 99.81% _start 0 0% 0% 4281ms 99.74% main 0 0% 0% 4242ms 98.84% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 2ms 0.047% 0.047% 4235ms 98.67% AbstractCardiacProblem::Solve 1ms 0.023% 0.07% 4219ms 98.30% AbstractDynamicLinearPdeSolver::Solve 40ms 0.93% 1.00% 2228ms 51.91% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 1.03% 1592ms 37.09% LinearSystem::Solve 1ms 0.023% 1.05% 1539ms 35.86% KSPSolve 3ms 0.07% 1.12% 1539ms 35.86% KSPSolve_Private 2ms 0.047% 1.16% 1484ms 34.58% KSPSolve_SYMMLQ 40ms 0.93% 2.10% 1223ms 28.49% AbstractCardiacCell::ComputeExceptVoltage 30ms 0.7% 2.80% 1019ms 23.74% AbstractOneStepIvpOdeSolver::InternalSolve 5ms 0.12% 2.91% 876ms 20.41% PCApply 60ms 1.40% 4.31% 867ms 20.20% EulerIvpOdeSolver::CalculateNextYValue 0 0% 4.31% 860ms 20.04% PCApply_BJacobi_Singleblock 207ms 4.82% 9.13% 801ms 18.66% CellLuoRudy1991FromCellML::EvaluateYDerivatives 393ms 9.16% 18.29% 765ms 17.82% __GI___exp 0 0% 18.29% 745ms 17.36% KSPSolve_PREONLY (partial-inline) 270ms 6.29% 24.58% 739ms 17.22% CellLuoRudy1991FromCellML::GetIIonic 2ms 0.047% 24.63% 689ms 16.05% MatSolve 0 0% 24.63% 689ms 16.05% PCApply_ICC 681ms 15.87% 40.49% 683ms 15.91% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 40.49% 643ms 14.98% KSP_PCApply.lto_priv.18 3ms 0.07% 40.56% 522ms 12.16% MatMult 12ms 0.28% 40.84% 513ms 11.95% MatMult_SeqAIJ (partial-inline) 499ms 11.63% 52.47% 513ms 11.95% MatMult_SeqAIJ_Inode (inline) 283ms 6.59% 59.06% 356ms 8.29% __ieee754_exp_fma 88ms 2.05% 61.11% 346ms 8.06% BidomainSolver::SetupLinearSystem 3ms 0.07% 61.18% 324ms 7.55% KSPConvergedDefault 1ms 0.023% 61.21% 315ms 7.34% KSP_PCApply (partial-inline) 30ms 0.7% 61.91% 237ms 5.52% __pow 19ms 0.44% 62.35% 207ms 4.82% __ieee754_pow_fma 1ms 0.023% 62.37% 138ms 3.22% MatNullSpaceRemove 91ms 2.12% 64.49% 118ms 2.75% CellLuoRudy1991FromCellML::VerifyStateVariables 114ms 2.66% 67.15% 114ms 2.66% log_inline (inline) 21ms 0.49% 67.64% 108ms 2.52% MPI_Wtime 0 0% 67.64% 92ms 2.14% VecMDot 3ms 0.07% 67.71% 92ms 2.14% VecMXDot_Private 1ms 0.023% 67.73% 87ms 2.03% __GI___clock_gettime 86ms 2.00% 69.73% 86ms 2.00% [[vdso]] 0 0% 69.73% 79ms 1.84% VecDuplicate 6ms 0.14% 69.87% 74ms 1.72% PetscLogEventBeginDefault 18ms 0.42% 70.29% 74ms 1.72% PetscLogEventEndDefault 65ms 1.51% 71.81% 67ms 1.56% exp_inline (inline) 36ms 0.84% 72.65% 64ms 1.49% TimeStepper::TimeStepper 61ms 1.42% 74.07% 61ms 1.42% VecMDot_Seq 59ms 1.37% 75.44% 59ms 1.37% ddot_ 43ms 1.00% 76.44% 59ms 1.37% top12 (inline) 6ms 0.14% 76.58% 54ms 1.26% VecCopy 51ms 1.19% 77.77% 51ms 1.19% AbstractParameterisedSystem::SetAnyVariable 1ms 0.023% 77.80% 51ms 1.19% VecDestroy 1ms 0.023% 77.82% 50ms 1.16% VecDuplicate_MPI 15ms 0.35% 78.17% 49ms 1.14% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 78.17% 49ms 1.14% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.023% 78.19% 48ms 1.12% KSP_RemoveNullSpace (inline) 1ms 0.023% 78.22% 46ms 1.07% VecDot 6ms 0.14% 78.36% 45ms 1.05% VecAXPY 2ms 0.047% 78.40% 45ms 1.05% VecMAXPY 36ms 0.84% 79.24% 44ms 1.03% AbstractOneStepIvpOdeSolver::Solve 2ms 0.047% 79.29% 43ms 1.00% VecNorm 40ms 0.93% 80.22% 40ms 0.93% [libchaste_heart.so] 40ms 0.93% 81.15% 40ms 0.93% asuint64 (inline) 18ms 0.42% 81.57% 39ms 0.91% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 38ms 0.89% 82.46% 38ms 0.89% TimeStepper::CalculateNextTime 0 0% 82.46% 37ms 0.86% VecDot_Seq 0 0% 82.46% 37ms 0.86% VecXDot_Seq_Private.constprop.0 36ms 0.84% 83.29% 37ms 0.86% __ieee754_log_fma 0 0% 83.29% 35ms 0.82% CxxTest::RealWorldDescription::setUp 0 0% 83.29% 35ms 0.82% PMPI_Init_thread 0 0% 83.29% 35ms 0.82% PetscInitialize 0 0% 83.29% 35ms 0.82% PetscSetup::setUpWorld 0 0% 83.29% 35ms 0.82% PetscSetupUtils::CommonSetup 0 0% 83.29% 35ms 0.82% PetscSetupUtils::InitialisePetsc 1ms 0.023% 83.32% 35ms 0.82% VecNorm_Seq 0 0% 83.32% 35ms 0.82% ompi_mpi_init 29ms 0.68% 83.99% 34ms 0.79% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 1ms 0.023% 84.02% 34ms 0.79% VecCreate 32ms 0.75% 84.76% 32ms 0.75% AbstractParameterisedSystem::GetAnyVariable 2ms 0.047% 84.81% 31ms 0.72% 10ms 0.23% 85.04% 31ms 0.72% AbstractCardiacCell::SetVoltage 6ms 0.14% 85.18% 31ms 0.72% PetscMallocA 29ms 0.68% 85.86% 29ms 0.68% DistributedVector::Iterator::operator!= 1ms 0.023% 85.88% 29ms 0.68% VecDuplicate_Seq 11ms 0.26% 86.14% 28ms 0.65% TimeStepper::AdvanceOneTimeStep 1ms 0.023% 86.16% 28ms 0.65% VecAXPY_Seq 0 0% 86.16% 27ms 0.63% VecNorm_MPI 0 0% 86.16% 27ms 0.63% VecNorm_MPI_Default.constprop.0 27ms 0.63% 86.79% 27ms 0.63% __memcpy_avx_unaligned_erms 26ms 0.61% 87.40% 26ms 0.61% daxpy_ 2ms 0.047% 87.44% 25ms 0.58% PetscMallocAlign 1ms 0.023% 87.47% 25ms 0.58% VecCreate_MPI_Private 24ms 0.56% 88.02% 24ms 0.56% ReplicatableVector::operator[] 23ms 0.54% 88.56% 23ms 0.54% VecMAXPY_Seq 0 0% 88.56% 22ms 0.51% PetscMemcpy (inline) 1ms 0.023% 88.58% 22ms 0.51% VecCopy_Seq (partial-inline) 0 0% 88.58% 22ms 0.51% orte_init