File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108240ms, 91.73% of 117993ms total Dropped 1124 nodes (cum <= 589.97ms) flat flat% sum% cum cum% 0 0% 0% 117977ms 100% __libc_start_call_main 0 0% 0% 117977ms 100% __libc_start_main_impl 0 0% 0% 117977ms 100% _start 0 0% 0% 117974ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 117974ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 117974ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 117974ms 100% main 0 0% 0% 117943ms 100% AbstractConvergenceTester::Converge 0 0% 0% 117943ms 100% CxxTest::RealTestDescription::run 0 0% 0% 117943ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 117943ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 117943ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 117943ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 3ms 0.0025% 0.0025% 116718ms 98.92% AbstractCardiacProblem::Solve 5ms 0.0042% 0.0068% 116006ms 98.32% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0042% 0.011% 64632ms 54.78% LinearSystem::Solve 3ms 0.0025% 0.014% 64189ms 54.40% KSPSolve 17ms 0.014% 0.028% 64186ms 54.40% KSPSolve_Private 9ms 0.0076% 0.036% 63824ms 54.09% KSPSolve_SYMMLQ 187ms 0.16% 0.19% 42499ms 36.02% AbstractCardiacTissue::SolveCellSystems 2ms 0.0017% 0.2% 36370ms 30.82% PCApply 6ms 0.0051% 0.2% 36358ms 30.81% PCApply_BJacobi_Singleblock 1ms 0.00085% 0.2% 34100ms 28.90% KSPSolve_PREONLY (partial-inline) 5ms 0.0042% 0.21% 32971ms 27.94% MatSolve 0 0% 0.21% 32971ms 27.94% PCApply_ICC 32490ms 27.54% 27.74% 32966ms 27.94% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1389ms 1.18% 28.92% 32650ms 27.67% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00085% 28.92% 31288ms 26.52% KSP_PCApply.lto_priv.18 6791ms 5.76% 34.67% 28278ms 23.97% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 3ms 0.0025% 34.68% 21398ms 18.13% MatMult 270ms 0.23% 34.91% 21395ms 18.13% MatMult_SeqAIJ (partial-inline) 20914ms 17.72% 52.63% 21395ms 18.13% MatMult_SeqAIJ_Inode (inline) 1960ms 1.66% 54.29% 14848ms 12.58% CardiacNewtonSolver::Solve 347ms 0.29% 54.59% 9044ms 7.66% AbstractCardiacTissue::UpdateCaches (inline) 4482ms 3.80% 58.38% 8715ms 7.39% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1958ms 1.66% 60.04% 8470ms 7.18% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1137ms 0.96% 61.01% 7750ms 6.57% BidomainSolver::SetupLinearSystem 3ms 0.0025% 61.01% 7163ms 6.07% KSP_PCApply (partial-inline) 1120ms 0.95% 61.96% 7162ms 6.07% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00085% 61.96% 6569ms 5.57% KSPConvergedDefault 5799ms 4.91% 66.88% 5799ms 4.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3916ms 3.32% 70.19% 3949ms 3.35% __ieee754_log_fma 0 0% 70.19% 3736ms 3.17% boost::numeric::ublas::norm_inf (inline) 2455ms 2.08% 72.27% 3736ms 3.17% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.27% 3736ms 3.17% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.27% 3736ms 3.17% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 7ms 0.0059% 72.28% 3279ms 2.78% MatNullSpaceRemove 28ms 0.024% 72.30% 3177ms 2.69% std::pow (inline) 412ms 0.35% 72.65% 3145ms 2.67% __pow 3098ms 2.63% 75.28% 3098ms 2.63% __memcpy_avx_unaligned_erms 0 0% 75.28% 3050ms 2.58% PetscMemcpy (inline) 1699ms 1.44% 76.72% 2811ms 2.38% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2791ms 2.37% 79.08% 2791ms 2.37% ddot_ 367ms 0.31% 79.40% 2722ms 2.31% __ieee754_pow_fma 22ms 0.019% 79.41% 2617ms 2.22% VecCopy 2ms 0.0017% 79.42% 2594ms 2.20% VecCopy_Seq (partial-inline) 19ms 0.016% 79.43% 2476ms 2.10% VecAXPY 7ms 0.0059% 79.44% 2457ms 2.08% VecAXPY_Seq 2432ms 2.06% 81.50% 2432ms 2.06% daxpy_ 3ms 0.0025% 81.50% 2283ms 1.93% VecDot 0 0% 81.50% 2280ms 1.93% VecDot_Seq 3ms 0.0025% 81.50% 2280ms 1.93% VecXDot_Seq_Private.constprop.0 0 0% 81.50% 2102ms 1.78% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.50% 1860ms 1.58% VecMDot 7ms 0.0059% 81.51% 1860ms 1.58% VecMXDot_Private 1847ms 1.57% 83.08% 1849ms 1.57% VecMDot_Seq 24ms 0.02% 83.10% 1737ms 1.47% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1553ms 1.32% 84.41% 1616ms 1.37% exp_inline (inline) 1444ms 1.22% 85.64% 1444ms 1.22% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 85.64% 1428ms 1.21% AbstractFeAssemblerInterface::AssembleMatrix (inline) 2ms 0.0017% 85.64% 1412ms 1.20% VecMAXPY 1404ms 1.19% 86.83% 1410ms 1.19% VecMAXPY_Seq 0 0% 86.83% 1162ms 0.98% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.83% 1162ms 0.98% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.83% 1162ms 0.98% boost_numeric_ublas_abs (inline) 1162ms 0.98% 87.81% 1162ms 0.98% std::abs (inline) 6ms 0.0051% 87.82% 1144ms 0.97% boost::numeric::ublas::matrix_assign (inline) 218ms 0.18% 88.00% 1133ms 0.96% boost::numeric::ublas::indexing_matrix_assign 843ms 0.71% 88.72% 1085ms 0.92% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 88.72% 1079ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.72% 1079ms 0.91% CuboidMeshConstructor::Construct 2ms 0.0017% 88.72% 1079ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 1ms 0.00085% 88.72% 983ms 0.83% Element::Element 2ms 0.0017% 88.72% 978ms 0.83% AbstractTetrahedralElement::CalculateJacobian 968ms 0.82% 89.54% 968ms 0.82% __memset_avx2_unaligned_erms 0 0% 89.54% 951ms 0.81% PetscMemzero (inline) 0 0% 89.54% 929ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 6ms 0.0051% 89.55% 880ms 0.75% BidomainAssembler::ComputeMatrixTerm 5ms 0.0042% 89.55% 865ms 0.73% boost::numeric::ublas::c_matrix::c_matrix (inline) 844ms 0.72% 90.27% 844ms 0.72% [libchaste_heart.so] 1ms 0.00085% 90.27% 821ms 0.7% VecDuplicate 1ms 0.00085% 90.27% 806ms 0.68% AbstractBidomainSolver::FinaliseLinearSystem 241ms 0.2% 90.47% 804ms 0.68% AbstractBidomainSolver::CheckCompatibilityCondition 7ms 0.0059% 90.48% 772ms 0.65% VecScale 4ms 0.0034% 90.48% 765ms 0.65% VecScale_Seq 757ms 0.64% 91.12% 757ms 0.64% dscal_ 5ms 0.0042% 91.13% 729ms 0.62% VecNorm 1ms 0.00085% 91.13% 720ms 0.61% VecNorm_Seq 5ms 0.0042% 91.13% 711ms 0.6% PetscMallocA 9ms 0.0076% 91.14% 706ms 0.6% PetscMallocAlign (partial-inline) 699ms 0.59% 91.73% 699ms 0.59% log_inline (inline) 0 0% 91.73% 674ms 0.57% AbstractFeAssemblerInterface::Assemble (inline) 3ms 0.0025% 91.73% 662ms 0.56% BidomainProblem::WriteOneStep