File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12630ms, 86.20% of 14652ms total Dropped 707 nodes (cum <= 73.26ms) flat flat% sum% cum cum% 0 0% 0% 14645ms 100% __libc_start_call_main 0 0% 0% 14645ms 100% __libc_start_main_impl 0 0% 0% 14645ms 100% _start 0 0% 0% 14642ms 99.93% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14642ms 99.93% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14642ms 99.93% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14642ms 99.93% main 0 0% 0% 14607ms 99.69% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14607ms 99.69% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14607ms 99.69% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 1ms 0.0068% 0.0068% 14586ms 99.55% AbstractCardiacProblem::Solve 4ms 0.027% 0.034% 11316ms 77.23% AbstractDynamicLinearPdeSolver::Solve 32ms 0.22% 0.25% 9055ms 61.80% AbstractCardiacTissue::SolveCellSystems 99ms 0.68% 0.93% 5575ms 38.05% AbstractCardiacCell::ComputeExceptVoltage 99ms 0.68% 1.60% 4849ms 33.09% AbstractOneStepIvpOdeSolver::InternalSolve 147ms 1.00% 2.61% 4193ms 28.62% EulerIvpOdeSolver::CalculateNextYValue 936ms 6.39% 9.00% 3991ms 27.24% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1703ms 11.62% 20.62% 3550ms 24.23% __GI___exp 1ms 0.0068% 20.63% 3201ms 21.85% MonodomainProblem::WriteOneStep 0 0% 20.63% 3028ms 20.67% Hdf5DataWriter::PutVector 2ms 0.014% 20.64% 3018ms 20.60% H5Dwrite 2ms 0.014% 20.65% 2988ms 20.39% H5D__write 106ms 0.72% 21.38% 2591ms 17.68% AbstractCardiacTissue::UpdateCaches (inline) 781ms 5.33% 26.71% 2443ms 16.67% CellLuoRudy1991FromCellML::GetIIonic 1606ms 10.96% 37.67% 1773ms 12.10% __ieee754_exp_fma 0 0% 37.67% 1723ms 11.76% H5D__chunk_collective_write 16ms 0.11% 37.78% 1723ms 11.76% H5F_set_coll_metadata_reads 12ms 0.082% 37.86% 1569ms 10.71% H5FD_s3comms_uriencode 0 0% 37.86% 1547ms 10.56% LinearSystem::Solve 1ms 0.0068% 37.87% 1441ms 9.83% KSPSolve 5ms 0.034% 37.90% 1440ms 9.83% KSPSolve_Private 4ms 0.027% 37.93% 1429ms 9.75% KSPSolve_CG 40ms 0.27% 38.20% 1251ms 8.54% 1ms 0.0068% 38.21% 1250ms 8.53% H5F_block_write 1ms 0.0068% 38.21% 1249ms 8.52% H5F__accum_write 0 0% 38.21% 1249ms 8.52% H5PB_write 3ms 0.02% 38.23% 1248ms 8.52% H5FD_write 6ms 0.041% 38.27% 1142ms 7.79% H5D__chunk_cacheable 0 0% 38.27% 1142ms 7.79% H5D__mpio_select_write 0 0% 38.27% 1048ms 7.15% PMPI_File_write_at_all 1026ms 7.00% 45.28% 1027ms 7.01% __GI_pwritev64 379ms 2.59% 47.86% 990ms 6.76% H5S_select_iterate 15ms 0.1% 47.97% 882ms 6.02% std::pow (inline) 86ms 0.59% 48.55% 866ms 5.91% __pow 1ms 0.0068% 48.56% 841ms 5.74% PCApply 0 0% 48.56% 831ms 5.67% PCApply_BJacobi_Singleblock 3ms 0.02% 48.58% 790ms 5.39% KSPSolve_PREONLY 1ms 0.0068% 48.59% 783ms 5.34% PCApply_ICC 2ms 0.014% 48.60% 782ms 5.34% MatSolve 773ms 5.28% 53.88% 780ms 5.32% MatSolve_SeqSBAIJ_1_NaturalOrdering 103ms 0.7% 54.58% 779ms 5.32% __ieee754_pow_fma 364ms 2.48% 57.06% 710ms 4.85% CellLuoRudy1991FromCellML::VerifyStateVariables 347ms 2.37% 59.43% 694ms 4.74% MonodomainSolver::SetupLinearSystem 55ms 0.38% 59.81% 615ms 4.20% H5D__chunk_set_sizes 0 0% 59.81% 550ms 3.75% KSP_PCApply.lto_priv.7 2ms 0.014% 59.82% 507ms 3.46% MatMult 504ms 3.44% 63.26% 505ms 3.45% MatMult_SeqAIJ 65ms 0.44% 63.70% 417ms 2.85% H5S_mpio_space_type 401ms 2.74% 66.44% 401ms 2.74% log_inline (inline) 0 0% 66.44% 362ms 2.47% KSPConvergedDefault 0 0% 66.44% 298ms 2.03% KSP_PCApply 126ms 0.86% 67.30% 261ms 1.78% TimeStepper::TimeStepper 248ms 1.69% 68.99% 251ms 1.71% exp_inline (inline) 38ms 0.26% 69.25% 201ms 1.37% __GI___libc_malloc 169ms 1.15% 70.41% 196ms 1.34% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 159ms 1.09% 71.49% 192ms 1.31% _int_malloc 108ms 0.74% 72.23% 187ms 1.28% top12 (inline) 151ms 1.03% 73.26% 186ms 1.27% AbstractOneStepIvpOdeSolver::Solve 186ms 1.27% 74.53% 186ms 1.27% [libchaste_heart.so] 15ms 0.1% 74.63% 185ms 1.26% H5VM_chunk_index 2ms 0.014% 74.65% 172ms 1.17% Hdf5DataWriter::PutUnlimitedVariable 20ms 0.14% 74.78% 162ms 1.11% __GI___libc_free 93ms 0.63% 75.42% 159ms 1.09% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 157ms 1.07% 76.49% 157ms 1.07% ddot_ 152ms 1.04% 77.53% 152ms 1.04% std::isinf (inline) 3ms 0.02% 77.55% 150ms 1.02% ompi_datatype_destroy 6ms 0.041% 77.59% 147ms 1.00% ompi_datatype_create 3ms 0.02% 77.61% 144ms 0.98% MPI_Type_free 141ms 0.96% 78.57% 141ms 0.96% TimeStepper::CalculateNextTime 48ms 0.33% 78.90% 141ms 0.96% _int_free 42ms 0.29% 79.18% 140ms 0.96% ompi_datatype_release_args 5ms 0.034% 79.22% 140ms 0.96% ompi_info_register_framework_params 63ms 0.43% 79.65% 133ms 0.91% H5S_hyper_add_span_element 13ms 0.089% 79.74% 123ms 0.84% H5S_set_version 122ms 0.83% 80.57% 122ms 0.83% __ieee754_log_fma 27ms 0.18% 80.75% 121ms 0.83% AbstractCardiacCell::SetVoltage (partial-inline) 39ms 0.27% 81.02% 116ms 0.79% std::__cxx11::basic_string::basic_string 43ms 0.29% 81.31% 110ms 0.75% H5VM_array_calc 0 0% 81.31% 109ms 0.74% PMPI_File_set_view 3ms 0.02% 81.33% 108ms 0.74% VecNorm 1ms 0.0068% 81.34% 98ms 0.67% VecDuplicate 1ms 0.0068% 81.35% 98ms 0.67% VecNorm_Seq 2ms 0.014% 81.36% 97ms 0.66% VecDuplicate_MPI 94ms 0.64% 82.00% 94ms 0.64% __memcpy_avx_unaligned_erms 1ms 0.0068% 82.01% 89ms 0.61% PMPI_Type_create_resized 76ms 0.52% 82.53% 87ms 0.59% AbstractParameterisedSystem::SetAnyVariable 87ms 0.59% 83.12% 87ms 0.59% H5VM_chunk_index_scaled 86ms 0.59% 83.71% 86ms 0.59% asuint64 (inline) 2ms 0.014% 83.72% 85ms 0.58% H5D__chunk_allocated 85ms 0.58% 84.30% 85ms 0.58% H5VM_array_offset_pre 1ms 0.0068% 84.31% 85ms 0.58% VecTDot 85ms 0.58% 84.89% 85ms 0.58% std::vector::operator[] (inline) 0 0% 84.89% 83ms 0.57% H5D__select_write 1ms 0.0068% 84.90% 83ms 0.57% H5Dgather 0 0% 84.90% 83ms 0.57% VecTDot_Seq 1ms 0.0068% 84.90% 83ms 0.57% VecXDot_Seq_Private.constprop.0 2ms 0.014% 84.92% 83ms 0.57% ompi_datatype_duplicate 0 0% 84.92% 82ms 0.56% H5D__contig_fill 2ms 0.014% 84.93% 82ms 0.56% H5VM_opvv 60ms 0.41% 85.34% 81ms 0.55% TimeStepper::AdvanceOneTimeStep 0 0% 85.34% 80ms 0.55% H5D__contig_write 4ms 0.027% 85.37% 80ms 0.55% H5P_create_id 0 0% 85.37% 80ms 0.55% H5Pcreate 46ms 0.31% 85.68% 78ms 0.53% H5SL_search 76ms 0.52% 86.20% 76ms 0.52% [libm.so.6]