File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3559ms, 84.96% of 4189ms total Dropped 481 nodes (cum <= 20.95ms) flat flat% sum% cum cum% 0 0% 0% 4182ms 99.83% __libc_start_call_main 0 0% 0% 4182ms 99.83% __libc_start_main_impl 0 0% 0% 4182ms 99.83% _start 0 0% 0% 4179ms 99.76% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4179ms 99.76% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4179ms 99.76% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4179ms 99.76% main 0 0% 0% 4140ms 98.83% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4140ms 98.83% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4140ms 98.83% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4133ms 98.66% AbstractCardiacProblem::Solve 1ms 0.024% 0.024% 4116ms 98.26% AbstractDynamicLinearPdeSolver::Solve 11ms 0.26% 0.29% 2297ms 54.83% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.31% 1521ms 36.31% LinearSystem::Solve 0 0% 0.31% 1473ms 35.16% KSPSolve 6ms 0.14% 0.45% 1473ms 35.16% KSPSolve_Private 3ms 0.072% 0.53% 1422ms 33.95% KSPSolve_SYMMLQ 28ms 0.67% 1.19% 1276ms 30.46% AbstractCardiacCell::ComputeExceptVoltage 23ms 0.55% 1.74% 1075ms 25.66% AbstractOneStepIvpOdeSolver::InternalSolve 45ms 1.07% 2.82% 902ms 21.53% EulerIvpOdeSolver::CalculateNextYValue 3ms 0.072% 2.89% 865ms 20.65% PCApply 1ms 0.024% 2.91% 856ms 20.43% PCApply_BJacobi_Singleblock 224ms 5.35% 8.26% 847ms 20.22% CellLuoRudy1991FromCellML::EvaluateYDerivatives 384ms 9.17% 17.43% 790ms 18.86% __GI___exp 25ms 0.6% 18.02% 774ms 18.48% AbstractCardiacTissue::UpdateCaches (inline) 252ms 6.02% 24.04% 728ms 17.38% CellLuoRudy1991FromCellML::GetIIonic 0 0% 24.04% 708ms 16.90% KSPSolve_PREONLY (partial-inline) 2ms 0.048% 24.09% 665ms 15.87% PCApply_ICC 3ms 0.072% 24.16% 663ms 15.83% MatSolve 654ms 15.61% 39.77% 658ms 15.71% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 39.77% 646ms 15.42% KSP_PCApply.lto_priv.18 3ms 0.072% 39.84% 421ms 10.05% MatMult 3ms 0.072% 39.91% 412ms 9.84% MatMult_SeqAIJ 403ms 9.62% 49.53% 412ms 9.84% MatMult_SeqAIJ_Inode (inline) 364ms 8.69% 58.22% 387ms 9.24% __ieee754_exp_fma 2ms 0.048% 58.27% 313ms 7.47% KSPConvergedDefault 0 0% 58.27% 296ms 7.07% KSP_PCApply (partial-inline) 55ms 1.31% 59.58% 255ms 6.09% BidomainSolver::SetupLinearSystem 1ms 0.024% 59.61% 252ms 6.02% std::pow (inline) 24ms 0.57% 60.18% 251ms 5.99% __pow 34ms 0.81% 60.99% 227ms 5.42% __ieee754_pow_fma 89ms 2.12% 63.12% 193ms 4.61% CellLuoRudy1991FromCellML::VerifyStateVariables 2ms 0.048% 63.17% 125ms 2.98% MatNullSpaceRemove 106ms 2.53% 65.70% 106ms 2.53% log_inline (inline) 1ms 0.024% 65.72% 99ms 2.36% VecDuplicate 81ms 1.93% 67.65% 81ms 1.93% exp_inline (inline) 21ms 0.5% 68.15% 75ms 1.79% MPI_Wtime 0 0% 68.15% 74ms 1.77% VecMDot 2ms 0.048% 68.20% 74ms 1.77% VecMXDot_Private 66ms 1.58% 69.78% 66ms 1.58% ddot_ 32ms 0.76% 70.54% 61ms 1.46% TimeStepper::TimeStepper 15ms 0.36% 70.90% 57ms 1.36% PetscLogEventBeginDefault 1ms 0.024% 70.92% 57ms 1.36% VecDestroy 54ms 1.29% 72.21% 54ms 1.29% [[vdso]] 0 0% 72.21% 54ms 1.29% __GI___clock_gettime 40ms 0.95% 73.17% 53ms 1.27% AbstractOneStepIvpOdeSolver::Solve 6ms 0.14% 73.31% 51ms 1.22% VecCopy 1ms 0.024% 73.33% 51ms 1.22% VecDuplicate_MPI 41ms 0.98% 74.31% 50ms 1.19% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 6ms 0.14% 74.46% 50ms 1.19% PetscLogEventEndDefault 48ms 1.15% 75.60% 50ms 1.19% VecMDot_Seq 3ms 0.072% 75.67% 49ms 1.17% VecDot 1ms 0.024% 75.70% 49ms 1.17% VecMAXPY 25ms 0.6% 76.30% 47ms 1.12% TimeStepper::AdvanceOneTimeStep 5ms 0.12% 76.41% 47ms 1.12% VecAXPY 1ms 0.024% 76.44% 47ms 1.12% VecDuplicate_Seq 46ms 1.10% 77.54% 46ms 1.10% TimeStepper::CalculateNextTime 5ms 0.12% 77.66% 43ms 1.03% PetscMallocA 13ms 0.31% 77.97% 43ms 1.03% std::__cxx11::basic_string::basic_string 0 0% 77.97% 42ms 1.00% VecDot_Seq 0 0% 77.97% 42ms 1.00% VecXDot_Seq_Private.constprop.0 42ms 1.00% 78.97% 42ms 1.00% std::isinf (inline) 1ms 0.024% 78.99% 41ms 0.98% VecCreate 10ms 0.24% 79.23% 40ms 0.95% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.024% 79.26% 39ms 0.93% VecNorm 3ms 0.072% 79.33% 38ms 0.91% PetscMallocAlign 36ms 0.86% 80.19% 37ms 0.88% __ieee754_log_fma 0 0% 80.19% 36ms 0.86% VecNorm_Seq 14ms 0.33% 80.52% 35ms 0.84% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 80.52% 35ms 0.84% AbstractBidomainSolver::FinaliseLinearSystem 21ms 0.5% 81.02% 34ms 0.81% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 81.02% 34ms 0.81% CxxTest::RealWorldDescription::setUp 0 0% 81.02% 34ms 0.81% PetscSetup::setUpWorld 0 0% 81.02% 34ms 0.81% PetscSetupUtils::CommonSetup 0 0% 81.02% 33ms 0.79% PMPI_Init_thread 0 0% 81.02% 33ms 0.79% PetscInitialize 0 0% 81.02% 33ms 0.79% PetscSetupUtils::InitialisePetsc 0 0% 81.02% 33ms 0.79% ompi_mpi_init 0 0% 81.02% 30ms 0.72% PetscMemcpy (inline) 29ms 0.69% 81.71% 29ms 0.69% [libchaste_heart.so] 21ms 0.5% 82.22% 27ms 0.64% AbstractParameterisedSystem::SetAnyVariable 0 0% 82.22% 27ms 0.64% VecAXPY_Seq 2ms 0.048% 82.26% 27ms 0.64% VecCreate_MPI_Private 27ms 0.64% 82.91% 27ms 0.64% __memcpy_avx_unaligned_erms 27ms 0.64% 83.55% 27ms 0.64% daxpy_ 23ms 0.55% 84.10% 26ms 0.62% VecMAXPY_Seq 1ms 0.024% 84.13% 25ms 0.6% 1ms 0.024% 84.15% 25ms 0.6% VecSetType 2ms 0.048% 84.20% 24ms 0.57% VecCopy_Seq (partial-inline) 0 0% 84.20% 24ms 0.57% orte_init 14ms 0.33% 84.53% 24ms 0.57% top12 (inline) 10ms 0.24% 84.77% 23ms 0.55% PetscOptionsFindPair 0 0% 84.77% 23ms 0.55% VecNorm_MPI 0 0% 84.77% 23ms 0.55% VecNorm_MPI_Default.constprop.0 4ms 0.095% 84.87% 22ms 0.53% PetscHeaderDestroy_Private 4ms 0.095% 84.96% 22ms 0.53% __posix_memalign