File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 118442ms, 91.43% of 129539ms total Dropped 1130 nodes (cum <= 647.70ms) flat flat% sum% cum cum% 0 0% 0% 129523ms 100% __libc_start_call_main 0 0% 0% 129523ms 100% __libc_start_main_impl 0 0% 0% 129523ms 100% _start 0 0% 0% 129520ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 129520ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 129520ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 129520ms 100% main 0 0% 0% 129480ms 100% AbstractConvergenceTester::Converge 0 0% 0% 129480ms 100% CxxTest::RealTestDescription::run 0 0% 0% 129480ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 129480ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 129480ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 129480ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 3ms 0.0023% 0.0023% 128275ms 99.02% AbstractCardiacProblem::Solve 4ms 0.0031% 0.0054% 127412ms 98.36% AbstractDynamicLinearPdeSolver::Solve 4ms 0.0031% 0.0085% 70663ms 54.55% LinearSystem::Solve 2ms 0.0015% 0.01% 70150ms 54.15% KSPSolve 9ms 0.0069% 0.017% 70149ms 54.15% KSPSolve_Private 9ms 0.0069% 0.024% 69808ms 53.89% KSPSolve_SYMMLQ 475ms 0.37% 0.39% 47307ms 36.52% AbstractCardiacTissue::SolveCellSystems 1ms 0.00077% 0.39% 40183ms 31.02% PCApply 5ms 0.0039% 0.4% 40171ms 31.01% PCApply_BJacobi_Singleblock 2ms 0.0015% 0.4% 37898ms 29.26% KSPSolve_PREONLY (partial-inline) 933ms 0.72% 1.12% 36917ms 28.50% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 1ms 0.00077% 1.12% 36780ms 28.39% PCApply_ICC 5ms 0.0039% 1.12% 36779ms 28.39% MatSolve 36398ms 28.10% 29.22% 36774ms 28.39% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 3ms 0.0023% 29.22% 34563ms 26.68% KSP_PCApply.lto_priv.18 7800ms 6.02% 35.24% 32756ms 25.29% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 15ms 0.012% 35.26% 23920ms 18.47% MatMult 322ms 0.25% 35.50% 23905ms 18.45% MatMult_SeqAIJ (partial-inline) 23386ms 18.05% 53.56% 23902ms 18.45% MatMult_SeqAIJ_Inode (inline) 2286ms 1.76% 55.32% 17069ms 13.18% CardiacNewtonSolver::Solve 5487ms 4.24% 59.56% 10115ms 7.81% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1358ms 1.05% 60.61% 9275ms 7.16% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 232ms 0.18% 60.78% 8975ms 6.93% AbstractCardiacTissue::UpdateCaches (inline) 1736ms 1.34% 62.12% 8345ms 6.44% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1198ms 0.92% 63.05% 8211ms 6.34% BidomainSolver::SetupLinearSystem 7635ms 5.89% 68.94% 7635ms 5.89% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 2ms 0.0015% 68.95% 7609ms 5.87% KSP_PCApply (partial-inline) 4ms 0.0031% 68.95% 7086ms 5.47% KSPConvergedDefault 4390ms 3.39% 72.34% 4477ms 3.46% __ieee754_log_fma 0 0% 72.34% 4193ms 3.24% boost::numeric::ublas::norm_inf (inline) 2911ms 2.25% 74.58% 4193ms 3.24% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 74.58% 4193ms 3.24% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 74.58% 4193ms 3.24% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3644ms 2.81% 77.40% 3644ms 2.81% ddot_ 9ms 0.0069% 77.40% 3387ms 2.61% MatNullSpaceRemove 27ms 0.021% 77.43% 3249ms 2.51% std::pow (inline) 443ms 0.34% 77.77% 3210ms 2.48% __pow 12ms 0.0093% 77.78% 3112ms 2.40% VecDot 0 0% 77.78% 3100ms 2.39% VecDot_Seq 2ms 0.0015% 77.78% 3100ms 2.39% VecXDot_Seq_Private.constprop.0 1977ms 1.53% 79.30% 3020ms 2.33% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2811ms 2.17% 81.47% 2811ms 2.17% __memcpy_avx_unaligned_erms 0 0% 81.47% 2777ms 2.14% PetscMemcpy (inline) 373ms 0.29% 81.76% 2727ms 2.11% __ieee754_pow_fma 15ms 0.012% 81.77% 2423ms 1.87% VecCopy 1ms 0.00077% 81.77% 2406ms 1.86% VecCopy_Seq (partial-inline) 2ms 0.0015% 81.78% 2125ms 1.64% VecMDot 8ms 0.0062% 81.78% 2123ms 1.64% VecMXDot_Private 2105ms 1.62% 83.41% 2108ms 1.63% VecMDot_Seq 0 0% 83.41% 2069ms 1.60% AbstractFeVolumeIntegralAssembler::DoAssemble 16ms 0.012% 83.42% 1911ms 1.48% VecAXPY 2ms 0.0015% 83.42% 1895ms 1.46% VecAXPY_Seq 1881ms 1.45% 84.87% 1881ms 1.45% daxpy_ 30ms 0.023% 84.90% 1708ms 1.32% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1579ms 1.22% 86.12% 1635ms 1.26% exp_inline (inline) 0 0% 86.12% 1416ms 1.09% AbstractFeAssemblerInterface::AssembleMatrix (inline) 0 0% 86.12% 1271ms 0.98% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.12% 1271ms 0.98% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.12% 1271ms 0.98% boost_numeric_ublas_abs (inline) 1271ms 0.98% 87.10% 1271ms 0.98% std::abs (inline) 2ms 0.0015% 87.10% 1253ms 0.97% VecMAXPY 1243ms 0.96% 88.06% 1251ms 0.97% VecMAXPY_Seq 3ms 0.0023% 88.06% 1105ms 0.85% boost::numeric::ublas::matrix_assign (inline) 220ms 0.17% 88.23% 1099ms 0.85% boost::numeric::ublas::indexing_matrix_assign 704ms 0.54% 88.77% 1042ms 0.8% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 88.77% 1032ms 0.8% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.77% 1032ms 0.8% CuboidMeshConstructor::Construct 2ms 0.0015% 88.77% 1032ms 0.8% DistributedTetrahedralMesh::ConstructCuboid 988ms 0.76% 89.54% 988ms 0.76% [libchaste_heart.so] 3ms 0.0023% 89.54% 925ms 0.71% AbstractTetrahedralElement::CalculateJacobian 3ms 0.0023% 89.54% 916ms 0.71% Element::Element 12ms 0.0093% 89.55% 876ms 0.68% boost::numeric::ublas::c_matrix::c_matrix (inline) 235ms 0.18% 89.73% 870ms 0.67% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 89.73% 870ms 0.67% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.00077% 89.73% 862ms 0.67% AbstractTetrahedralElement::AbstractTetrahedralElement 5ms 0.0039% 89.74% 842ms 0.65% BidomainAssembler::ComputeMatrixTerm 1ms 0.00077% 89.74% 835ms 0.64% VecNorm 1ms 0.00077% 89.74% 827ms 0.64% VecNorm_Seq 8ms 0.0062% 89.75% 817ms 0.63% VecScale 1ms 0.00077% 89.75% 809ms 0.62% VecScale_Seq 808ms 0.62% 90.37% 808ms 0.62% dscal_ 0 0% 90.37% 798ms 0.62% BidomainProblem::WriteOneStep 694ms 0.54% 90.91% 694ms 0.54% __memset_avx2_unaligned_erms 683ms 0.53% 91.43% 683ms 0.53% log_inline (inline) 0 0% 91.43% 679ms 0.52% PetscMemzero (inline) 0 0% 91.43% 653ms 0.5% AbstractFeAssemblerInterface::Assemble (inline) 1ms 0.00077% 91.43% 653ms 0.5% VecDuplicate