File: TestMonodomainSlabLong Type: cpu Showing nodes accounting for 12627ms, 85.58% of 14754ms total Dropped 749 nodes (cum <= 73.77ms) flat flat% sum% cum cum% 0 0% 0% 14747ms 100% __libc_start_call_main 0 0% 0% 14747ms 100% __libc_start_main_impl 0 0% 0% 14747ms 100% _start 0 0% 0% 14744ms 99.93% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 14744ms 99.93% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 14744ms 99.93% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 14744ms 99.93% main 0 0% 0% 14702ms 99.65% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 14702ms 99.65% CxxTest::TestRunner::runTest (inline) 0 0% 0% 14702ms 99.65% TestMonodomainSlabLong::TestMonodomainSlabLongWithCornerNodesStimulated 3ms 0.02% 0.02% 14678ms 99.48% AbstractCardiacProblem::Solve 2ms 0.014% 0.034% 11313ms 76.68% AbstractDynamicLinearPdeSolver::Solve 48ms 0.33% 0.36% 8885ms 60.22% AbstractCardiacTissue::SolveCellSystems 96ms 0.65% 1.01% 5339ms 36.19% AbstractCardiacCell::ComputeExceptVoltage 96ms 0.65% 1.66% 4668ms 31.64% AbstractOneStepIvpOdeSolver::InternalSolve 138ms 0.94% 2.60% 3991ms 27.05% EulerIvpOdeSolver::CalculateNextYValue 821ms 5.56% 8.16% 3818ms 25.88% CellLuoRudy1991FromCellML::EvaluateYDerivatives 1883ms 12.76% 20.92% 3566ms 24.17% __GI___exp 0 0% 20.92% 3306ms 22.41% MonodomainProblem::WriteOneStep 0 0% 20.92% 3145ms 21.32% Hdf5DataWriter::PutVector 3ms 0.02% 20.94% 3138ms 21.27% H5Dwrite 4ms 0.027% 20.97% 3108ms 21.07% H5D__write 125ms 0.85% 21.82% 2850ms 19.32% AbstractCardiacTissue::UpdateCaches (inline) 779ms 5.28% 27.10% 2648ms 17.95% CellLuoRudy1991FromCellML::GetIIonic 0 0% 27.10% 1896ms 12.85% H5D__chunk_collective_write 16ms 0.11% 27.21% 1896ms 12.85% H5F_set_coll_metadata_reads 20ms 0.14% 27.34% 1709ms 11.58% H5FD_s3comms_uriencode 1ms 0.0068% 27.35% 1651ms 11.19% LinearSystem::Solve 1291ms 8.75% 36.10% 1632ms 11.06% __ieee754_exp_fma 0 0% 36.10% 1537ms 10.42% KSPSolve 2ms 0.014% 36.11% 1537ms 10.42% KSPSolve_Private 5ms 0.034% 36.15% 1526ms 10.34% KSPSolve_CG 4ms 0.027% 36.17% 1357ms 9.20% H5F_block_write 5ms 0.034% 36.21% 1353ms 9.17% H5PB_write 49ms 0.33% 36.54% 1349ms 9.14% 1ms 0.0068% 36.55% 1348ms 9.14% H5F__accum_write 1ms 0.0068% 36.55% 1347ms 9.13% H5FD_write 0 0% 36.55% 1251ms 8.48% H5D__mpio_select_write 3ms 0.02% 36.57% 1145ms 7.76% PMPI_File_write_at_all 1109ms 7.52% 44.09% 1111ms 7.53% __GI_pwritev64 6ms 0.041% 44.13% 1075ms 7.29% H5D__chunk_cacheable 4ms 0.027% 44.16% 981ms 6.65% std::pow (inline) 99ms 0.67% 44.83% 974ms 6.60% __pow 306ms 2.07% 46.90% 911ms 6.17% H5S_select_iterate 91ms 0.62% 47.52% 875ms 5.93% __ieee754_pow_fma 2ms 0.014% 47.53% 863ms 5.85% PCApply 3ms 0.02% 47.55% 852ms 5.77% PCApply_BJacobi_Singleblock 0 0% 47.55% 817ms 5.54% KSPSolve_PREONLY 0 0% 47.55% 811ms 5.50% MatSolve 801ms 5.43% 52.98% 811ms 5.50% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 52.98% 811ms 5.50% PCApply_ICC 357ms 2.42% 55.40% 758ms 5.14% MonodomainSolver::SetupLinearSystem 0 0% 55.40% 625ms 4.24% KSP_PCApply.lto_priv.7 70ms 0.47% 55.88% 624ms 4.23% H5D__chunk_set_sizes 5ms 0.034% 55.91% 576ms 3.90% MatMult 567ms 3.84% 59.75% 571ms 3.87% MatMult_SeqAIJ 70ms 0.47% 60.23% 463ms 3.14% H5S_mpio_space_type 196ms 1.33% 61.56% 450ms 3.05% CellLuoRudy1991FromCellML::VerifyStateVariables 436ms 2.96% 64.51% 436ms 2.96% log_inline (inline) 2ms 0.014% 64.52% 329ms 2.23% KSPConvergedDefault 311ms 2.11% 66.63% 315ms 2.14% exp_inline (inline) 223ms 1.51% 68.14% 280ms 1.90% top12 (inline) 96ms 0.65% 68.79% 256ms 1.74% TimeStepper::TimeStepper 0 0% 68.79% 241ms 1.63% KSP_PCApply 239ms 1.62% 70.41% 239ms 1.62% [libchaste_heart.so] 53ms 0.36% 70.77% 202ms 1.37% AbstractCardiacCell::SetVoltage (partial-inline) 7ms 0.047% 70.82% 199ms 1.35% H5VM_chunk_index 49ms 0.33% 71.15% 188ms 1.27% __GI___libc_malloc 151ms 1.02% 72.18% 184ms 1.25% _int_malloc 180ms 1.22% 73.40% 180ms 1.22% ddot_ 24ms 0.16% 73.56% 169ms 1.15% __GI___libc_free 12ms 0.081% 73.64% 168ms 1.14% ompi_datatype_destroy 9ms 0.061% 73.70% 164ms 1.11% MPI_Type_free 8ms 0.054% 73.76% 164ms 1.11% ompi_datatype_create 4ms 0.027% 73.78% 161ms 1.09% Hdf5DataWriter::PutUnlimitedVariable 135ms 0.92% 74.70% 158ms 1.07% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 155ms 1.05% 75.75% 155ms 1.05% asuint64 (inline) 154ms 1.04% 76.79% 154ms 1.04% TimeStepper::CalculateNextTime 50ms 0.34% 77.13% 144ms 0.98% _int_free 99ms 0.67% 77.80% 143ms 0.97% AbstractOneStepIvpOdeSolver::Solve 39ms 0.26% 78.07% 140ms 0.95% H5S_set_version 9ms 0.061% 78.13% 139ms 0.94% ompi_info_register_framework_params 136ms 0.92% 79.05% 136ms 0.92% __memcpy_avx_unaligned_erms 27ms 0.18% 79.23% 136ms 0.92% ompi_datatype_release_args 124ms 0.84% 80.07% 124ms 0.84% __ieee754_log_fma 2ms 0.014% 80.09% 123ms 0.83% VecNorm 45ms 0.31% 80.39% 121ms 0.82% H5S_hyper_add_span_element 4ms 0.027% 80.42% 120ms 0.81% PMPI_File_set_view 89ms 0.6% 81.02% 119ms 0.81% AbstractParameterisedSystem::SetAnyVariable 0 0% 81.02% 112ms 0.76% VecDuplicate 3ms 0.02% 81.04% 112ms 0.76% VecDuplicate_MPI 2ms 0.014% 81.06% 111ms 0.75% VecNorm_Seq 3ms 0.02% 81.08% 109ms 0.74% PMPI_Type_create_resized 109ms 0.74% 81.82% 109ms 0.74% std::isinf (inline) 48ms 0.33% 82.14% 108ms 0.73% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 1ms 0.0068% 82.15% 106ms 0.72% VecTDot 0 0% 82.15% 105ms 0.71% VecTDot_Seq 0 0% 82.15% 105ms 0.71% VecXDot_Seq_Private.constprop.0 103ms 0.7% 82.85% 103ms 0.7% H5VM_chunk_index_scaled 36ms 0.24% 83.09% 101ms 0.68% H5VM_array_calc 1ms 0.0068% 83.10% 101ms 0.68% ompi_datatype_duplicate 79ms 0.54% 83.63% 97ms 0.66% AbstractParameterisedSystem::GetAnyVariable 90ms 0.61% 84.24% 90ms 0.61% H5VM_array_offset_pre 5ms 0.034% 84.28% 88ms 0.6% H5D__chunk_allocated 0 0% 84.28% 88ms 0.6% std::vector::_M_assign_aux (inline) 0 0% 84.28% 88ms 0.6% std::vector::assign (inline) 1ms 0.0068% 84.28% 83ms 0.56% H5D__contig_fill 0 0% 84.28% 83ms 0.56% H5D__select_write 0 0% 84.28% 83ms 0.56% H5Dgather 2ms 0.014% 84.30% 81ms 0.55% H5VM_opvv 29ms 0.2% 84.49% 79ms 0.54% AbstractCardiacCell::GetVoltage (inline) 1ms 0.0068% 84.50% 79ms 0.54% H5D__contig_write 78ms 0.53% 85.03% 78ms 0.53% TimeStepper::GetNextTimeStep 23ms 0.16% 85.18% 78ms 0.53% __libc_calloc 1ms 0.0068% 85.19% 77ms 0.52% opal_datatype_create_desc 8ms 0.054% 85.24% 76ms 0.52% std::__copy_move::__copy_m (inline) 0 0% 85.24% 76ms 0.52% std::__copy_move_a (inline) 0 0% 85.24% 76ms 0.52% std::__copy_move_a1 (inline) 0 0% 85.24% 76ms 0.52% std::__copy_move_a2 (inline) 0 0% 85.24% 76ms 0.52% std::copy (inline) 50ms 0.34% 85.58% 75ms 0.51% TimeStepper::AdvanceOneTimeStep