File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3592ms, 88.06% of 4079ms total Dropped 487 nodes (cum <= 20.39ms) flat flat% sum% cum cum% 0 0% 0% 4072ms 99.83% __libc_start_call_main 0 0% 0% 4072ms 99.83% __libc_start_main_impl 0 0% 0% 4072ms 99.83% _start 0 0% 0% 4069ms 99.75% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4069ms 99.75% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4069ms 99.75% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4069ms 99.75% main 0 0% 0% 4036ms 98.95% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4036ms 98.95% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4035ms 98.92% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 0 0% 0% 4028ms 98.75% AbstractCardiacProblem::Solve 0 0% 0% 4014ms 98.41% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 2104ms 51.58% LinearSystem::Solve 0 0% 0% 2055ms 50.38% KSPSolve 4ms 0.098% 0.098% 2055ms 50.38% KSPSolve_Private 3ms 0.074% 0.17% 2008ms 49.23% KSPSolve_CG 8ms 0.2% 0.37% 1645ms 40.33% AbstractCardiacTissue::SolveCellSystems 3ms 0.074% 0.44% 1370ms 33.59% PCApply 2ms 0.049% 0.49% 1358ms 33.29% PCApply_BJacobi_Singleblock 56ms 1.37% 1.86% 1135ms 27.83% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 1.86% 1127ms 27.63% KSPSolve_PREONLY (partial-inline) 0 0% 1.86% 1090ms 26.72% KSP_PCApply.lto_priv.7 1ms 0.025% 1.89% 1069ms 26.21% PCApply_ICC 4ms 0.098% 1.99% 1068ms 26.18% MatSolve 1051ms 25.77% 27.75% 1058ms 25.94% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 205ms 5.03% 32.78% 992ms 24.32% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 3ms 0.074% 32.85% 470ms 11.52% MatMult 12ms 0.29% 33.15% 469ms 11.50% AbstractCardiacTissue::UpdateCaches (inline) 5ms 0.12% 33.27% 465ms 11.40% MatMult_SeqAIJ 455ms 11.15% 44.42% 464ms 11.38% MatMult_SeqAIJ_Inode (inline) 60ms 1.47% 45.89% 456ms 11.18% CardiacNewtonSolver::Solve 126ms 3.09% 48.98% 440ms 10.79% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 2ms 0.049% 49.03% 374ms 9.17% KSPConvergedDefault 0 0% 49.03% 370ms 9.07% KSP_PCApply (partial-inline) 125ms 3.06% 52.10% 259ms 6.35% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 37ms 0.91% 53.00% 224ms 5.49% BidomainSolver::SetupLinearSystem 22ms 0.54% 53.54% 221ms 5.42% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 22ms 0.54% 54.08% 217ms 5.32% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 54.08% 194ms 4.76% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables (inline) 42ms 1.03% 55.11% 194ms 4.76% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 189ms 4.63% 59.75% 189ms 4.63% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 165ms 4.05% 63.79% 167ms 4.09% __ieee754_log_fma 0 0% 63.79% 156ms 3.82% MatNullSpaceRemove 10ms 0.25% 64.04% 131ms 3.21% __pow 0 0% 64.04% 131ms 3.21% std::pow (inline) 0 0% 64.04% 130ms 3.19% boost::numeric::ublas::norm_inf (inline) 92ms 2.26% 66.29% 130ms 3.19% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 66.29% 130ms 3.19% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 66.29% 130ms 3.19% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 129ms 3.16% 69.45% 129ms 3.16% ddot_ 72ms 1.77% 71.22% 121ms 2.97% __GI___exp 23ms 0.56% 71.78% 121ms 2.97% __ieee754_pow_fma 1ms 0.025% 71.81% 118ms 2.89% VecDuplicate 2ms 0.049% 71.86% 101ms 2.48% VecNorm 0 0% 71.86% 100ms 2.45% VecMDot 10ms 0.25% 72.10% 100ms 2.45% VecMXDot_Private 2ms 0.049% 72.15% 86ms 2.11% VecTDot 54ms 1.32% 73.47% 84ms 2.06% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 3ms 0.074% 73.55% 80ms 1.96% VecNorm_Seq 20ms 0.49% 74.04% 79ms 1.94% MPI_Wtime 0 0% 74.04% 72ms 1.77% VecDuplicate_Seq 67ms 1.64% 75.68% 70ms 1.72% VecMDot_Seq 0 0% 75.68% 70ms 1.72% VecTDot_Seq 2ms 0.049% 75.73% 70ms 1.72% VecXDot_Seq_Private.constprop.0 64ms 1.57% 77.30% 68ms 1.67% exp_inline (inline) 3ms 0.074% 77.37% 65ms 1.59% VecDestroy 9ms 0.22% 77.59% 61ms 1.50% PetscMallocA 2ms 0.049% 77.64% 59ms 1.45% __GI___clock_gettime 57ms 1.40% 79.04% 57ms 1.40% [[vdso]] 4ms 0.098% 79.14% 56ms 1.37% VecMAXPY 4ms 0.098% 79.24% 54ms 1.32% VecCreate 4ms 0.098% 79.33% 53ms 1.30% PetscLogEventEndDefault 1ms 0.025% 79.36% 52ms 1.27% KSP_RemoveNullSpace (inline) 11ms 0.27% 79.63% 52ms 1.27% PetscLogEventBeginDefault 6ms 0.15% 79.77% 52ms 1.27% PetscMallocAlign (partial-inline) 43ms 1.05% 80.83% 49ms 1.20% __ieee754_exp_fma 6ms 0.15% 80.98% 45ms 1.10% VecDuplicate_MPI (partial-inline) 37ms 0.91% 81.88% 37ms 0.91% VecMAXPY_Seq 0 0% 81.88% 37ms 0.91% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 81.88% 37ms 0.91% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 81.88% 37ms 0.91% boost_numeric_ublas_abs (inline) 37ms 0.91% 82.79% 37ms 0.91% std::abs (inline) 1ms 0.025% 82.81% 34ms 0.83% AbstractBidomainSolver::FinaliseLinearSystem 8ms 0.2% 83.01% 33ms 0.81% AbstractBidomainSolver::CheckCompatibilityCondition 1ms 0.025% 83.04% 33ms 0.81% VecSetType 32ms 0.78% 83.82% 32ms 0.78% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 83.82% 31ms 0.76% PetscMemzero (inline) 5ms 0.12% 83.94% 31ms 0.76% VecCopy 0 0% 83.94% 30ms 0.74% CxxTest::RealWorldDescription::setUp 0 0% 83.94% 30ms 0.74% PetscInitialize 0 0% 83.94% 30ms 0.74% PetscSetup::setUpWorld 0 0% 83.94% 30ms 0.74% PetscSetupUtils::CommonSetup 0 0% 83.94% 30ms 0.74% PetscSetupUtils::InitialisePetsc 30ms 0.74% 84.68% 30ms 0.74% __memset_avx2_unaligned_erms 30ms 0.74% 85.41% 30ms 0.74% log_inline (inline) 0 0% 85.41% 29ms 0.71% PMPI_Init_thread 0 0% 85.41% 29ms 0.71% VecNorm_MPI 0 0% 85.41% 29ms 0.71% VecNorm_MPI_Default.constprop.0 0 0% 85.41% 29ms 0.71% ompi_mpi_init 28ms 0.69% 86.10% 28ms 0.69% [libchaste_heart.so] 1ms 0.025% 86.12% 25ms 0.61% 5ms 0.12% 86.25% 25ms 0.61% PetscFreeAlign 5ms 0.12% 86.37% 25ms 0.61% PetscHeaderDestroy_Private 0 0% 86.37% 25ms 0.61% PetscMemcpy (inline) 0 0% 86.37% 25ms 0.61% VecCreate_Seq 3ms 0.074% 86.44% 24ms 0.59% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#23}::operator() (inline) 9ms 0.22% 86.66% 24ms 0.59% __GI___libc_free 4ms 0.098% 86.76% 24ms 0.59% __GI___libc_malloc 0 0% 86.76% 24ms 0.59% __posix_memalign 1ms 0.025% 86.79% 23ms 0.56% VecAYPX 22ms 0.54% 87.33% 22ms 0.54% DistributedVector::Iterator::operator!= 5ms 0.12% 87.45% 22ms 0.54% PetscHeaderCreate_Private 0 0% 87.45% 22ms 0.54% orte_init 0 0% 87.45% 21ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 6ms 0.15% 87.59% 21ms 0.51% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables()::{lambda(double)#3}::operator() (inline) 19ms 0.47% 88.06% 21ms 0.51% VecAYPX_Seq