File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3651ms, 86.64% of 4214ms total Dropped 439 nodes (cum <= 21.07ms) flat flat% sum% cum cum% 0 0% 0% 4206ms 99.81% __libc_start_call_main 0 0% 0% 4206ms 99.81% __libc_start_main_impl 0 0% 0% 4206ms 99.81% _start 0 0% 0% 4203ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4203ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4203ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4203ms 99.74% main 0 0% 0% 4169ms 98.93% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4169ms 98.93% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4169ms 98.93% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 0 0% 0% 4163ms 98.79% AbstractCardiacProblem::Solve 1ms 0.024% 0.024% 4152ms 98.53% AbstractDynamicLinearPdeSolver::Solve 18ms 0.43% 0.45% 2417ms 57.36% AbstractCardiacTissue::SolveCellSystems 31ms 0.74% 1.19% 1388ms 32.94% AbstractCardiacCell::ComputeExceptVoltage 0 0% 1.19% 1345ms 31.92% LinearSystem::Solve 0 0% 1.19% 1305ms 30.97% KSPSolve 4ms 0.095% 1.28% 1305ms 30.97% KSPSolve_Private 1ms 0.024% 1.31% 1271ms 30.16% KSPSolve_SYMMLQ 26ms 0.62% 1.92% 1188ms 28.19% AbstractOneStepIvpOdeSolver::InternalSolve 79ms 1.87% 3.80% 1018ms 24.16% EulerIvpOdeSolver::CalculateNextYValue 303ms 7.19% 10.99% 928ms 22.02% CellLuoRudy1991FromCellML::EvaluateYDerivatives 369ms 8.76% 19.74% 821ms 19.48% __GI___exp 1ms 0.024% 19.77% 806ms 19.13% PCApply 2ms 0.047% 19.81% 802ms 19.03% PCApply_BJacobi_Singleblock 26ms 0.62% 20.43% 787ms 18.68% AbstractCardiacTissue::UpdateCaches (inline) 242ms 5.74% 26.17% 723ms 17.16% CellLuoRudy1991FromCellML::GetIIonic 0 0% 26.17% 679ms 16.11% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 26.20% 652ms 15.47% MatSolve 0 0% 26.20% 652ms 15.47% PCApply_ICC 647ms 15.35% 41.55% 649ms 15.40% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 41.55% 589ms 13.98% KSP_PCApply.lto_priv.18 396ms 9.40% 50.95% 433ms 10.28% __ieee754_exp_fma 11ms 0.26% 51.21% 432ms 10.25% MatMult 6ms 0.14% 51.35% 414ms 9.82% MatMult_SeqAIJ 405ms 9.61% 60.96% 412ms 9.78% MatMult_SeqAIJ_Inode (inline) 58ms 1.38% 62.34% 338ms 8.02% BidomainSolver::SetupLinearSystem 1ms 0.024% 62.36% 275ms 6.53% KSPConvergedDefault 0 0% 62.36% 254ms 6.03% KSP_PCApply (partial-inline) 2ms 0.047% 62.41% 238ms 5.65% std::pow (inline) 17ms 0.4% 62.81% 236ms 5.60% __pow 29ms 0.69% 63.50% 219ms 5.20% __ieee754_pow_fma 78ms 1.85% 65.35% 178ms 4.22% CellLuoRudy1991FromCellML::VerifyStateVariables 119ms 2.82% 68.18% 119ms 2.82% log_inline (inline) 2ms 0.047% 68.22% 87ms 2.06% VecDuplicate 45ms 1.07% 69.29% 83ms 1.97% TimeStepper::TimeStepper 0 0% 69.29% 81ms 1.92% MatNullSpaceRemove 68ms 1.61% 70.91% 68ms 1.61% exp_inline (inline) 61ms 1.45% 72.35% 61ms 1.45% ddot_ 18ms 0.43% 72.78% 59ms 1.40% MPI_Wtime 9ms 0.21% 72.99% 54ms 1.28% PetscLogEventBeginDefault 0 0% 72.99% 54ms 1.28% VecMDot 5ms 0.12% 73.11% 54ms 1.28% VecMXDot_Private 45ms 1.07% 74.18% 52ms 1.23% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 40ms 0.95% 75.13% 52ms 1.23% AbstractOneStepIvpOdeSolver::Solve 2ms 0.047% 75.18% 47ms 1.12% VecDuplicate_MPI 0 0% 75.18% 46ms 1.09% VecNorm 8ms 0.19% 75.37% 45ms 1.07% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 75.37% 45ms 1.07% AbstractBidomainSolver::FinaliseLinearSystem 28ms 0.66% 76.03% 45ms 1.07% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 4ms 0.095% 76.13% 45ms 1.07% VecDot 6ms 0.14% 76.27% 44ms 1.04% VecCopy 44ms 1.04% 77.31% 44ms 1.04% [libchaste_heart.so] 44ms 1.04% 78.36% 44ms 1.04% std::isinf (inline) 1ms 0.024% 78.38% 43ms 1.02% VecNorm_Seq 14ms 0.33% 78.71% 42ms 1% std::__cxx11::basic_string::basic_string 9ms 0.21% 78.93% 41ms 0.97% PetscLogEventEndDefault 1ms 0.024% 78.95% 41ms 0.97% __GI___clock_gettime 7ms 0.17% 79.12% 40ms 0.95% PetscMallocA 40ms 0.95% 80.07% 40ms 0.95% [[vdso]] 38ms 0.9% 80.97% 38ms 0.9% TimeStepper::CalculateNextTime 0 0% 80.97% 38ms 0.9% VecDuplicate_Seq 1ms 0.024% 80.99% 35ms 0.83% VecCreate 34ms 0.81% 81.80% 35ms 0.83% VecMDot_Seq 14ms 0.33% 82.13% 35ms 0.83% top12 (inline) 1ms 0.024% 82.15% 33ms 0.78% PetscMallocAlign 0 0% 82.15% 33ms 0.78% VecDot_Seq 0 0% 82.15% 33ms 0.78% VecXDot_Seq_Private.constprop.0 33ms 0.78% 82.94% 33ms 0.78% __ieee754_log_fma 3ms 0.071% 83.01% 31ms 0.74% VecAXPY 1ms 0.024% 83.03% 31ms 0.74% VecCreate_MPI_Private 30ms 0.71% 83.74% 30ms 0.71% __memcpy_avx_unaligned_erms 0 0% 83.74% 29ms 0.69% CxxTest::RealWorldDescription::setUp 29ms 0.69% 84.43% 29ms 0.69% DistributedVector::Iterator::operator!= 0 0% 84.43% 29ms 0.69% PMPI_Init_thread 0 0% 84.43% 29ms 0.69% PetscInitialize 0 0% 84.43% 29ms 0.69% PetscSetup::setUpWorld 0 0% 84.43% 29ms 0.69% PetscSetupUtils::CommonSetup 0 0% 84.43% 29ms 0.69% PetscSetupUtils::InitialisePetsc 0 0% 84.43% 29ms 0.69% ompi_mpi_init 1ms 0.024% 84.46% 27ms 0.64% VecDestroy 3ms 0.071% 84.53% 27ms 0.64% VecMAXPY 26ms 0.62% 85.14% 26ms 0.62% RegularStimulus::GetStimulus 26ms 0.62% 85.76% 26ms 0.62% asuint64 (inline) 2ms 0.047% 85.81% 25ms 0.59% 25ms 0.59% 86.40% 25ms 0.59% DistributedVector::End 0 0% 86.40% 25ms 0.59% VecNorm_MPI 1ms 0.024% 86.43% 25ms 0.59% VecNorm_MPI_Default.constprop.0 9ms 0.21% 86.64% 22ms 0.52% AbstractCardiacCell::SetVoltage (partial-inline)