File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3648ms, 87.29% of 4179ms total Dropped 466 nodes (cum <= 20.89ms) flat flat% sum% cum cum% 0 0% 0% 4171ms 99.81% __libc_start_call_main 0 0% 0% 4171ms 99.81% __libc_start_main_impl 0 0% 0% 4171ms 99.81% _start 0 0% 0% 4168ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4168ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4168ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4168ms 99.74% main 0 0% 0% 4132ms 98.88% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4132ms 98.88% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4132ms 98.88% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4125ms 98.71% AbstractCardiacProblem::Solve 0 0% 0% 4113ms 98.42% AbstractDynamicLinearPdeSolver::Solve 12ms 0.29% 0.29% 2301ms 55.06% AbstractCardiacTissue::SolveCellSystems 0 0% 0.29% 1440ms 34.46% LinearSystem::Solve 0 0% 0.29% 1401ms 33.52% KSPSolve 2ms 0.048% 0.34% 1401ms 33.52% KSPSolve_Private 0 0% 0.34% 1357ms 32.47% KSPSolve_SYMMLQ 35ms 0.84% 1.17% 1310ms 31.35% AbstractCardiacCell::ComputeExceptVoltage 20ms 0.48% 1.65% 1053ms 25.20% AbstractOneStepIvpOdeSolver::InternalSolve 52ms 1.24% 2.90% 904ms 21.63% EulerIvpOdeSolver::CalculateNextYValue 3ms 0.072% 2.97% 849ms 20.32% PCApply 254ms 6.08% 9.05% 843ms 20.17% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 9.05% 841ms 20.12% PCApply_BJacobi_Singleblock 36ms 0.86% 9.91% 783ms 18.74% AbstractCardiacTissue::UpdateCaches (inline) 342ms 8.18% 18.09% 762ms 18.23% __GI___exp 269ms 6.44% 24.53% 719ms 17.21% CellLuoRudy1991FromCellML::GetIIonic 0 0% 24.53% 691ms 16.54% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 24.55% 650ms 15.55% MatSolve 0 0% 24.55% 650ms 15.55% PCApply_ICC 637ms 15.24% 39.79% 643ms 15.39% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 39.79% 610ms 14.60% KSP_PCApply.lto_priv.18 3ms 0.072% 39.87% 459ms 10.98% MatMult 6ms 0.14% 40.01% 450ms 10.77% MatMult_SeqAIJ (partial-inline) 441ms 10.55% 50.56% 450ms 10.77% MatMult_SeqAIJ_Inode (inline) 369ms 8.83% 59.39% 397ms 9.50% __ieee754_exp_fma 52ms 1.24% 60.64% 326ms 7.80% BidomainSolver::SetupLinearSystem 2ms 0.048% 60.68% 309ms 7.39% KSPConvergedDefault 0 0% 60.68% 284ms 6.80% KSP_PCApply (partial-inline) 1ms 0.024% 60.71% 228ms 5.46% std::pow (inline) 29ms 0.69% 61.40% 227ms 5.43% __pow 16ms 0.38% 61.79% 198ms 4.74% __ieee754_pow_fma 63ms 1.51% 63.29% 159ms 3.80% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 63.29% 107ms 2.56% MatNullSpaceRemove 0 0% 63.29% 104ms 2.49% VecDuplicate 102ms 2.44% 65.73% 102ms 2.44% log_inline (inline) 15ms 0.36% 66.09% 82ms 1.96% MPI_Wtime 76ms 1.82% 67.91% 76ms 1.82% exp_inline (inline) 0 0% 67.91% 74ms 1.77% VecMDot 5ms 0.12% 68.03% 74ms 1.77% VecMXDot_Private 56ms 1.34% 69.37% 68ms 1.63% AbstractOneStepIvpOdeSolver::Solve 1ms 0.024% 69.39% 67ms 1.60% __GI___clock_gettime 66ms 1.58% 70.97% 66ms 1.58% [[vdso]] 10ms 0.24% 71.21% 62ms 1.48% PetscLogEventEndDefault 61ms 1.46% 72.67% 61ms 1.46% ddot_ 5ms 0.12% 72.79% 58ms 1.39% VecDuplicate_MPI (partial-inline) 10ms 0.24% 73.03% 55ms 1.32% PetscLogEventBeginDefault 44ms 1.05% 74.08% 54ms 1.29% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 28ms 0.67% 74.75% 52ms 1.24% TimeStepper::TimeStepper 26ms 0.62% 75.38% 51ms 1.22% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 6ms 0.14% 75.52% 51ms 1.22% VecCopy 1ms 0.024% 75.54% 50ms 1.20% VecDot 45ms 1.08% 76.62% 47ms 1.12% VecMDot_Seq 0 0% 76.62% 46ms 1.10% VecDuplicate_Seq 4ms 0.096% 76.72% 45ms 1.08% VecDestroy 5ms 0.12% 76.84% 43ms 1.03% PetscMallocA 43ms 1.03% 77.87% 43ms 1.03% TimeStepper::CalculateNextTime 0 0% 77.87% 42ms 1.01% VecDot_Seq 0 0% 77.87% 42ms 1.01% VecXDot_Seq_Private.constprop.0 14ms 0.34% 78.20% 41ms 0.98% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 78.20% 41ms 0.98% AbstractBidomainSolver::FinaliseLinearSystem 7ms 0.17% 78.37% 41ms 0.98% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 78.37% 40ms 0.96% VecCreate 3ms 0.072% 78.44% 38ms 0.91% PetscMallocAlign 0 0% 78.44% 37ms 0.89% PetscMemcpy (inline) 37ms 0.89% 79.33% 37ms 0.89% std::isinf (inline) 1ms 0.024% 79.35% 36ms 0.86% VecNorm 4ms 0.096% 79.44% 35ms 0.84% VecCreate_MPI_Private 9ms 0.22% 79.66% 35ms 0.84% std::__cxx11::basic_string::basic_string 2ms 0.048% 79.71% 33ms 0.79% VecMAXPY 33ms 0.79% 80.50% 33ms 0.79% __memcpy_avx_unaligned_erms 0 0% 80.50% 32ms 0.77% CxxTest::RealWorldDescription::setUp 0 0% 80.50% 32ms 0.77% PetscSetup::setUpWorld 0 0% 80.50% 32ms 0.77% PetscSetupUtils::CommonSetup 0 0% 80.50% 32ms 0.77% VecNorm_Seq 10ms 0.24% 80.74% 32ms 0.77% top12 (inline) 15ms 0.36% 81.10% 31ms 0.74% AbstractCardiacCell::GetVoltage (partial-inline) 28ms 0.67% 81.77% 31ms 0.74% AbstractParameterisedSystem::GetAnyVariable 0 0% 81.77% 31ms 0.74% PMPI_Init_thread 0 0% 81.77% 31ms 0.74% PetscInitialize 0 0% 81.77% 31ms 0.74% PetscSetupUtils::InitialisePetsc 0 0% 81.77% 31ms 0.74% ompi_mpi_init 30ms 0.72% 82.48% 30ms 0.72% DistributedVector::Iterator::operator!= 21ms 0.5% 82.99% 29ms 0.69% AbstractParameterisedSystem::SetAnyVariable 6ms 0.14% 83.13% 29ms 0.69% TimeStepper::AdvanceOneTimeStep 5ms 0.12% 83.25% 29ms 0.69% VecAXPY 2ms 0.048% 83.30% 29ms 0.69% VecCopy_Seq (partial-inline) 6ms 0.14% 83.44% 28ms 0.67% __GI___libc_malloc 28ms 0.67% 84.11% 28ms 0.67% __ieee754_log_fma 28ms 0.67% 84.78% 28ms 0.67% __strlen_avx2 5ms 0.12% 84.90% 27ms 0.65% __posix_memalign 4ms 0.096% 85.00% 26ms 0.62% PetscHeaderDestroy_Private 0 0% 85.00% 25ms 0.6% VecNorm_MPI 0 0% 85.00% 25ms 0.6% VecNorm_MPI_Default.constprop.0 4ms 0.096% 85.09% 25ms 0.6% VecSet 24ms 0.57% 85.67% 24ms 0.57% [libchaste_heart.so] 0 0% 85.67% 23ms 0.55% 1ms 0.024% 85.69% 23ms 0.55% VecSetType 23ms 0.55% 86.24% 23ms 0.55% [libm.so.6] 22ms 0.53% 86.77% 22ms 0.53% asuint64 (inline) 0 0% 86.77% 22ms 0.53% orte_init 1ms 0.024% 86.79% 22ms 0.53% std::char_traits::length (inline) 21ms 0.5% 87.29% 21ms 0.5% DistributedVector::Stripe::operator[] (inline)