File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 111294ms, 91.84% of 121176ms total Dropped 1123 nodes (cum <= 605.88ms) flat flat% sum% cum cum% 0 0% 0% 121164ms 100% __libc_start_call_main 0 0% 0% 121164ms 100% __libc_start_main_impl 0 0% 0% 121164ms 100% _start 0 0% 0% 121161ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 121161ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 121161ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 121161ms 100% main 0 0% 0% 121126ms 100% AbstractConvergenceTester::Converge 0 0% 0% 121126ms 100% CxxTest::RealTestDescription::run 0 0% 0% 121126ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 121126ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 121126ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 121126ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 4ms 0.0033% 0.0033% 119847ms 98.90% AbstractCardiacProblem::Solve 12ms 0.0099% 0.013% 119025ms 98.22% AbstractDynamicLinearPdeSolver::Solve 5ms 0.0041% 0.017% 67170ms 55.43% LinearSystem::Solve 1ms 0.00083% 0.018% 66644ms 55.00% KSPSolve 12ms 0.0099% 0.028% 66643ms 55.00% KSPSolve_Private 12ms 0.0099% 0.038% 66209ms 54.64% KSPSolve_SYMMLQ 191ms 0.16% 0.2% 42712ms 35.25% AbstractCardiacTissue::SolveCellSystems 6ms 0.005% 0.2% 37335ms 30.81% PCApply 4ms 0.0033% 0.2% 37320ms 30.80% PCApply_BJacobi_Singleblock 2ms 0.0017% 0.21% 34558ms 28.52% KSPSolve_PREONLY (partial-inline) 3ms 0.0025% 0.21% 33482ms 27.63% PCApply_ICC 9ms 0.0074% 0.22% 33479ms 27.63% MatSolve 33001ms 27.23% 27.45% 33470ms 27.62% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1417ms 1.17% 28.62% 32824ms 27.09% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 8ms 0.0066% 28.63% 32200ms 26.57% KSP_PCApply.lto_priv.18 6781ms 5.60% 34.22% 28450ms 23.48% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.0058% 34.23% 22778ms 18.80% MatMult 277ms 0.23% 34.46% 22771ms 18.79% MatMult_SeqAIJ (partial-inline) 22255ms 18.37% 52.82% 22770ms 18.79% MatMult_SeqAIJ_Inode (inline) 1965ms 1.62% 54.44% 14675ms 12.11% CardiacNewtonSolver::Solve 479ms 0.4% 54.84% 9076ms 7.49% AbstractCardiacTissue::UpdateCaches (inline) 4457ms 3.68% 58.52% 8549ms 7.06% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1934ms 1.60% 60.11% 8369ms 6.91% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1124ms 0.93% 61.04% 8091ms 6.68% BidomainSolver::SetupLinearSystem 1194ms 0.99% 62.03% 7531ms 6.21% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 0 0% 62.03% 7106ms 5.86% KSP_PCApply (partial-inline) 3ms 0.0025% 62.03% 6556ms 5.41% KSPConvergedDefault 6059ms 5.00% 67.03% 6059ms 5.00% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3774ms 3.11% 70.14% 3812ms 3.15% __ieee754_log_fma 0 0% 70.14% 3723ms 3.07% boost::numeric::ublas::norm_inf (inline) 2549ms 2.10% 72.25% 3723ms 3.07% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.25% 3723ms 3.07% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.25% 3723ms 3.07% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 11ms 0.0091% 72.26% 3366ms 2.78% MatNullSpaceRemove 3340ms 2.76% 75.01% 3340ms 2.76% __memcpy_avx_unaligned_erms 0 0% 75.01% 3303ms 2.73% PetscMemcpy (inline) 30ms 0.025% 75.04% 3205ms 2.64% std::pow (inline) 370ms 0.31% 75.34% 3171ms 2.62% __pow 2875ms 2.37% 77.71% 2875ms 2.37% ddot_ 16ms 0.013% 77.73% 2870ms 2.37% VecCopy 2ms 0.0017% 77.73% 2851ms 2.35% VecCopy_Seq (partial-inline) 1720ms 1.42% 79.15% 2808ms 2.32% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 390ms 0.32% 79.47% 2790ms 2.30% __ieee754_pow_fma 19ms 0.016% 79.49% 2534ms 2.09% VecAXPY 3ms 0.0025% 79.49% 2515ms 2.08% VecAXPY_Seq 2504ms 2.07% 81.55% 2504ms 2.07% daxpy_ 3ms 0.0025% 81.56% 2349ms 1.94% VecDot 0 0% 81.56% 2346ms 1.94% VecDot_Seq 4ms 0.0033% 81.56% 2346ms 1.94% VecXDot_Seq_Private.constprop.0 6ms 0.005% 81.57% 2148ms 1.77% AbstractFeVolumeIntegralAssembler::DoAssemble 2ms 0.0017% 81.57% 1913ms 1.58% VecMDot 18ms 0.015% 81.58% 1911ms 1.58% VecMXDot_Private 1882ms 1.55% 83.14% 1887ms 1.56% VecMDot_Seq 24ms 0.02% 83.16% 1795ms 1.48% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1576ms 1.30% 84.46% 1638ms 1.35% exp_inline (inline) 0 0% 84.46% 1473ms 1.22% AbstractFeAssemblerInterface::AssembleMatrix (inline) 8ms 0.0066% 84.46% 1442ms 1.19% VecMAXPY 1431ms 1.18% 85.64% 1434ms 1.18% VecMAXPY_Seq 1348ms 1.11% 86.76% 1348ms 1.11% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 1278ms 1.05% 87.81% 1278ms 1.05% __memset_avx2_unaligned_erms 0 0% 87.81% 1270ms 1.05% PetscMemzero (inline) 7ms 0.0058% 87.82% 1174ms 0.97% boost::numeric::ublas::matrix_assign (inline) 216ms 0.18% 87.99% 1157ms 0.95% boost::numeric::ublas::indexing_matrix_assign 0 0% 87.99% 1123ms 0.93% CuboidMeshConstructor::Construct 0 0% 87.99% 1121ms 0.93% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00083% 88.00% 1121ms 0.93% DistributedTetrahedralMesh::ConstructCuboid 0 0% 88.00% 1098ms 0.91% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 88.00% 1098ms 0.91% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 88.00% 1098ms 0.91% boost_numeric_ublas_abs (inline) 1098ms 0.91% 88.90% 1098ms 0.91% std::abs (inline) 1ms 0.00083% 88.90% 1068ms 0.88% VecDuplicate 2ms 0.0017% 88.90% 1063ms 0.88% KSP_RemoveNullSpace (inline) 792ms 0.65% 89.56% 1061ms 0.88% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.0017% 89.56% 1011ms 0.83% Element::Element 2ms 0.0017% 89.56% 1004ms 0.83% AbstractTetrahedralElement::CalculateJacobian 3ms 0.0025% 89.56% 952ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 13ms 0.011% 89.57% 916ms 0.76% PetscMallocA 916ms 0.76% 90.33% 916ms 0.76% [libchaste_heart.so] 6ms 0.005% 90.33% 916ms 0.76% boost::numeric::ublas::c_matrix::c_matrix (inline) 4ms 0.0033% 90.34% 903ms 0.75% PetscMallocAlign (partial-inline) 7ms 0.0058% 90.34% 900ms 0.74% BidomainAssembler::ComputeMatrixTerm 13ms 0.011% 90.35% 875ms 0.72% VecScale 4ms 0.0033% 90.36% 862ms 0.71% VecScale_Seq 856ms 0.71% 91.06% 856ms 0.71% dscal_ 1ms 0.00083% 91.07% 775ms 0.64% VecNorm 2ms 0.0017% 91.07% 763ms 0.63% VecNorm_Seq 0 0% 91.07% 756ms 0.62% BidomainProblem::WriteOneStep 0 0% 91.07% 733ms 0.6% AbstractBidomainSolver::FinaliseLinearSystem 216ms 0.18% 91.24% 731ms 0.6% AbstractBidomainSolver::CheckCompatibilityCondition 723ms 0.6% 91.84% 723ms 0.6% log_inline (inline) 0 0% 91.84% 675ms 0.56% AbstractFeAssemblerInterface::Assemble (inline) 4ms 0.0033% 91.84% 668ms 0.55% VecDuplicate_Seq