File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3528ms, 86.43% of 4082ms total Dropped 437 nodes (cum <= 20.41ms) flat flat% sum% cum cum% 0 0% 0% 4075ms 99.83% __libc_start_call_main 0 0% 0% 4075ms 99.83% __libc_start_main_impl 0 0% 0% 4075ms 99.83% _start 0 0% 0% 4073ms 99.78% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4073ms 99.78% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4073ms 99.78% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4073ms 99.78% main 0 0% 0% 4036ms 98.87% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4036ms 98.87% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4036ms 98.87% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4029ms 98.70% AbstractCardiacProblem::Solve 0 0% 0.024% 4008ms 98.19% AbstractDynamicLinearPdeSolver::Solve 0 0% 0.024% 1948ms 47.72% LinearSystem::Solve 0 0% 0.024% 1905ms 46.67% KSPSolve 6ms 0.15% 0.17% 1905ms 46.67% KSPSolve_Private 2ms 0.049% 0.22% 1863ms 45.64% KSPSolve_SYMMLQ 12ms 0.29% 0.51% 1788ms 43.80% AbstractCardiacTissue::SolveCellSystems 3ms 0.073% 0.59% 1189ms 29.13% PCApply 0 0% 0.59% 1176ms 28.81% PCApply_BJacobi_Singleblock 26ms 0.64% 1.22% 1008ms 24.69% AbstractCardiacCell::ComputeExceptVoltage 1ms 0.024% 1.25% 1003ms 24.57% KSPSolve_PREONLY (partial-inline) 2ms 0.049% 1.30% 944ms 23.13% MatSolve 0 0% 1.30% 944ms 23.13% PCApply_ICC 932ms 22.83% 24.13% 938ms 22.98% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 18ms 0.44% 24.57% 862ms 21.12% AbstractOneStepIvpOdeSolver::InternalSolve 0 0% 24.57% 829ms 20.31% KSP_PCApply.lto_priv.18 46ms 1.13% 25.70% 731ms 17.91% EulerIvpOdeSolver::CalculateNextYValue 188ms 4.61% 30.30% 671ms 16.44% CellLuoRudy1991FromCellML::EvaluateYDerivatives 269ms 6.59% 36.89% 624ms 15.29% __GI___exp 24ms 0.59% 37.48% 614ms 15.04% AbstractCardiacTissue::UpdateCaches (inline) 194ms 4.75% 42.23% 567ms 13.89% CellLuoRudy1991FromCellML::GetIIonic 1ms 0.024% 42.26% 467ms 11.44% KSPConvergedDefault 2ms 0.049% 42.31% 463ms 11.34% MatMult 9ms 0.22% 42.53% 448ms 10.98% MatMult_SeqAIJ (partial-inline) 433ms 10.61% 53.14% 448ms 10.98% MatMult_SeqAIJ_Inode (inline) 0 0% 53.14% 445ms 10.90% KSP_PCApply (partial-inline) 313ms 7.67% 60.80% 341ms 8.35% __ieee754_exp_fma 61ms 1.49% 62.30% 239ms 5.85% BidomainSolver::SetupLinearSystem 4ms 0.098% 62.40% 170ms 4.16% std::pow (inline) 15ms 0.37% 62.76% 166ms 4.07% __pow 3ms 0.073% 62.84% 155ms 3.80% MatNullSpaceRemove 18ms 0.44% 63.28% 151ms 3.70% __ieee754_pow_fma 47ms 1.15% 64.43% 115ms 2.82% CellLuoRudy1991FromCellML::VerifyStateVariables 34ms 0.83% 65.26% 105ms 2.57% MPI_Wtime 2ms 0.049% 65.31% 105ms 2.57% VecDuplicate 0 0% 65.31% 89ms 2.18% VecMDot 5ms 0.12% 65.43% 89ms 2.18% VecMXDot_Private 19ms 0.47% 65.90% 84ms 2.06% PetscLogEventEndDefault 81ms 1.98% 67.88% 81ms 1.98% ddot_ 1ms 0.024% 67.91% 71ms 1.74% __GI___clock_gettime 70ms 1.71% 69.62% 70ms 1.71% [[vdso]] 11ms 0.27% 69.89% 67ms 1.64% PetscLogEventBeginDefault 67ms 1.64% 71.53% 67ms 1.64% log_inline (inline) 8ms 0.2% 71.73% 66ms 1.62% VecCopy 0 0% 71.73% 63ms 1.54% VecDuplicate_MPI 5ms 0.12% 71.85% 63ms 1.54% VecMAXPY 60ms 1.47% 73.32% 63ms 1.54% VecMDot_Seq 2ms 0.049% 73.37% 61ms 1.49% VecDot 1ms 0.024% 73.40% 59ms 1.45% VecDestroy 0 0% 73.40% 59ms 1.45% VecNorm 57ms 1.40% 74.79% 59ms 1.45% exp_inline (inline) 0 0% 74.79% 51ms 1.25% VecDot_Seq 0 0% 74.79% 51ms 1.25% VecXDot_Seq_Private.constprop.0 24ms 0.59% 75.38% 50ms 1.22% TimeStepper::TimeStepper 47ms 1.15% 76.53% 47ms 1.15% __ieee754_log_fma 1ms 0.024% 76.56% 45ms 1.10% VecAXPY 38ms 0.93% 77.49% 44ms 1.08% AbstractOneStepIvpOdeSolver::Solve 42ms 1.03% 78.52% 42ms 1.03% __memcpy_avx_unaligned_erms 4ms 0.098% 78.61% 41ms 1.00% PetscMallocA 0 0% 78.61% 40ms 0.98% PetscMemcpy (inline) 1ms 0.024% 78.64% 40ms 0.98% VecDuplicate_Seq 40ms 0.98% 79.62% 40ms 0.98% std::isinf (inline) 1ms 0.024% 79.64% 39ms 0.96% VecNorm_Seq 7ms 0.17% 79.81% 38ms 0.93% PetscHeaderDestroy_Private 3ms 0.073% 79.89% 37ms 0.91% PetscMallocAlign (partial-inline) 1ms 0.024% 79.91% 37ms 0.91% VecCreate 20ms 0.49% 80.40% 37ms 0.91% top12 (inline) 1ms 0.024% 80.43% 36ms 0.88% VecCreate_MPI_Private 9ms 0.22% 80.65% 35ms 0.86% AbstractCardiacCell::SetVoltage (partial-inline) 35ms 0.86% 81.50% 35ms 0.86% VecMAXPY_Seq 0 0% 81.50% 33ms 0.81% CxxTest::RealWorldDescription::setUp 0 0% 81.50% 33ms 0.81% PetscInitialize 0 0% 81.50% 33ms 0.81% PetscSetup::setUpWorld 0 0% 81.50% 33ms 0.81% PetscSetupUtils::CommonSetup 0 0% 81.50% 33ms 0.81% PetscSetupUtils::InitialisePetsc 21ms 0.51% 82.02% 32ms 0.78% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 82.02% 32ms 0.78% PMPI_Init_thread 32ms 0.78% 82.80% 32ms 0.78% TimeStepper::CalculateNextTime 0 0% 82.80% 32ms 0.78% VecCopy_Seq (partial-inline) 0 0% 82.80% 32ms 0.78% ompi_mpi_init 1ms 0.024% 82.83% 30ms 0.73% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 82.83% 30ms 0.73% VecAXPY_Seq 1ms 0.024% 82.85% 29ms 0.71% 7ms 0.17% 83.02% 29ms 0.71% AbstractBidomainSolver::CheckCompatibilityCondition 28ms 0.69% 83.71% 28ms 0.69% daxpy_ 4ms 0.098% 83.81% 27ms 0.66% VecSet 25ms 0.61% 84.42% 25ms 0.61% DistributedVector::Iterator::operator!= 1ms 0.024% 84.44% 25ms 0.61% VecSetType 25ms 0.61% 85.06% 25ms 0.61% [libchaste_heart.so] 4ms 0.098% 85.15% 23ms 0.56% PetscHeaderCreate_Private 0 0% 85.15% 23ms 0.56% PetscMemzero (inline) 0 0% 85.15% 23ms 0.56% VecNorm_MPI 2ms 0.049% 85.20% 23ms 0.56% VecNorm_MPI_Default.constprop.0 23ms 0.56% 85.77% 23ms 0.56% __memset_avx2_unaligned_erms 0 0% 85.77% 23ms 0.56% orte_init 22ms 0.54% 86.31% 22ms 0.54% AbstractParameterisedSystem::SetAnyVariable 5ms 0.12% 86.43% 22ms 0.54% __GI___libc_malloc 0 0% 86.43% 21ms 0.51% KSP_RemoveNullSpace (inline)