File: Test1dBidomainProblemForEfficiency Type: cpu Showing nodes accounting for 437ms, 89.73% of 487ms total Dropped 202 nodes (cum <= 2.44ms) flat flat% sum% cum cum% 0 0% 0% 478ms 98.15% __libc_start_call_main 0 0% 0% 478ms 98.15% __libc_start_main_impl 0 0% 0% 478ms 98.15% _start 0 0% 0% 474ms 97.33% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 474ms 97.33% CxxTest::TestRunner::runAllTests 0 0% 0% 474ms 97.33% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 474ms 97.33% main 0 0% 0% 431ms 88.50% CxxTest::RealTestDescription::run 0 0% 0% 431ms 88.50% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 431ms 88.50% CxxTest::TestRunner::runTest (inline) 0 0% 0% 431ms 88.50% Test1dBidomainProblemForEfficiency::TestBidomainDg01WithNoOutput 0 0% 0% 431ms 88.50% TestDescription_Test1dBidomainProblemForEfficiency_TestBidomainDg01WithNoOutput::runTest (inline) 0 0% 0% 426ms 87.47% AbstractCardiacProblem::Solve 0 0% 0% 426ms 87.47% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 386ms 79.26% LinearSystem::Solve 0 0% 0% 384ms 78.85% KSPSolve 2ms 0.41% 0.41% 384ms 78.85% KSPSolve_Private 0 0% 0.41% 383ms 78.64% KSPSolve_CG 0 0% 0.41% 231ms 47.43% KSP_PCApply.lto_priv.7 0 0% 0.41% 224ms 46.00% PCApply 0 0% 0.41% 224ms 46.00% PCApply_BJacobi_Singleblock 0 0% 0.41% 192ms 39.43% KSPSolve_PREONLY (partial-inline) 0 0% 0.41% 169ms 34.70% MatSolve 168ms 34.50% 34.91% 169ms 34.70% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 34.91% 169ms 34.70% PCApply_ICC 0 0% 34.91% 65ms 13.35% MatMult 0 0% 34.91% 65ms 13.35% MatMult_SeqAIJ 65ms 13.35% 48.25% 65ms 13.35% MatMult_SeqAIJ_Inode (inline) 59ms 12.11% 60.37% 59ms 12.11% ddot_ 0 0% 60.37% 40ms 8.21% MatNullSpaceRemove 0 0% 60.37% 40ms 8.21% VecTDot 0 0% 60.37% 40ms 8.21% VecTDot_Seq 0 0% 60.37% 40ms 8.21% VecXDot_Seq_Private.constprop.0 0 0% 60.37% 39ms 8.01% CxxTest::RealWorldDescription::setUp 0 0% 60.37% 39ms 8.01% PMPI_Init_thread 0 0% 60.37% 39ms 8.01% PetscInitialize 0 0% 60.37% 39ms 8.01% PetscSetup::setUpWorld 0 0% 60.37% 39ms 8.01% PetscSetupUtils::CommonSetup 0 0% 60.37% 39ms 8.01% PetscSetupUtils::InitialisePetsc 0 0% 60.37% 39ms 8.01% ompi_mpi_init 0 0% 60.37% 36ms 7.39% AbstractCardiacTissue::SolveCellSystems 2ms 0.41% 60.78% 33ms 6.78% 0 0% 60.78% 26ms 5.34% KSP_PCApply (partial-inline) 0 0% 60.78% 24ms 4.93% VecMDot 24ms 4.93% 65.71% 24ms 4.93% VecMDot_Seq 0 0% 65.71% 24ms 4.93% VecMXDot_Private 0 0% 65.71% 23ms 4.72% orte_init 0 0% 65.71% 22ms 4.52% AbstractCardiacCell::ComputeExceptVoltage 1ms 0.21% 65.91% 21ms 4.31% AbstractOneStepIvpOdeSolver::InternalSolve 2ms 0.41% 66.32% 20ms 4.11% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 66.32% 20ms 4.11% EulerIvpOdeSolver::CalculateNextYValue 0 0% 66.32% 20ms 4.11% VecNorm 0 0% 66.32% 20ms 4.11% VecNorm_Seq 9ms 1.85% 68.17% 18ms 3.70% __GI___exp 0 0% 68.17% 18ms 3.70% mca_base_framework_open 0 0% 68.17% 16ms 3.29% VecMAXPY 16ms 3.29% 71.46% 16ms 3.29% VecMAXPY_Seq 0 0% 71.46% 15ms 3.08% __GI__dl_catch_exception 0 0% 71.46% 15ms 3.08% _dl_catch_error 0 0% 71.46% 15ms 3.08% _dlerror_run 0 0% 71.46% 15ms 3.08% mca_base_framework_components_register 0 0% 71.46% 15ms 3.08% mca_base_framework_register 1ms 0.21% 71.66% 14ms 2.87% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 71.66% 14ms 2.87% hwloc_topology_load 0 0% 71.66% 14ms 2.87% opal_stackframe_output 0 0% 71.66% 13ms 2.67% VecAYPX 13ms 2.67% 74.33% 13ms 2.67% VecAYPX_Seq 0 0% 74.33% 13ms 2.67% ___dlopen 0 0% 74.33% 13ms 2.67% _dl_open 0 0% 74.33% 13ms 2.67% dl_open_worker 0 0% 74.33% 13ms 2.67% dlopen_doit 0 0% 74.33% 13ms 2.67% dlopen_implementation (inline) 0 0% 74.33% 13ms 2.67% hwloc_linux_get_tid_last_cpu_location 5ms 1.03% 75.36% 12ms 2.46% CellLuoRudy1991FromCellML::GetIIonic 0 0% 75.36% 12ms 2.46% VecAXPY 0 0% 75.36% 12ms 2.46% VecAXPY_Seq 0 0% 75.36% 12ms 2.46% _dl_init 0 0% 75.36% 12ms 2.46% call_init (inline) 0 0% 75.36% 12ms 2.46% mca_base_component_find 0 0% 75.36% 12ms 2.46% mca_base_component_repository_open 11ms 2.26% 77.62% 11ms 2.26% daxpy_ 0 0% 77.62% 10ms 2.05% VecDuplicate 0 0% 77.62% 10ms 2.05% VecDuplicate_Seq 0 0% 77.62% 9ms 1.85% dl_open_worker_begin 3ms 0.62% 78.23% 8ms 1.64% PetscMallocA 5ms 1.03% 79.26% 8ms 1.64% __ieee754_exp_fma 0 0% 79.26% 8ms 1.64% _dl_start_user 1ms 0.21% 79.47% 7ms 1.44% _dl_map_object 0 0% 79.47% 7ms 1.44% mca_base_framework_components_open 0 0% 79.47% 7ms 1.44% mca_topo_base_dist_graph_neighbors_count 0 0% 79.47% 6ms 1.23% PetscMemcpy (inline) 0 0% 79.47% 6ms 1.23% VecSetType 6ms 1.23% 80.70% 6ms 1.23% __memcpy_avx_unaligned_erms 6ms 1.23% 81.93% 6ms 1.23% __memset_avx2_unaligned_erms 6ms 1.23% 83.16% 6ms 1.23% _int_malloc 0 0% 83.16% 6ms 1.23% boost::serialization::detail::singleton_wrapper::singleton_wrapper (inline) 0 0% 83.16% 6ms 1.23% boost::serialization::singleton::get_instance 1ms 0.21% 83.37% 5ms 1.03% PetscMallocAlign (partial-inline) 0 0% 83.37% 5ms 1.03% PetscMemzero (inline) 0 0% 83.37% 5ms 1.03% VecCopy 0 0% 83.37% 5ms 1.03% VecCopy_Seq (partial-inline) 0 0% 83.37% 5ms 1.03% VecCreate_Seq 0 0% 83.37% 5ms 1.03% VecDestroy 2ms 0.41% 83.78% 5ms 1.03% __GI___libc_free 0 0% 83.78% 5ms 1.03% __GI___libc_malloc 0 0% 83.78% 5ms 1.03% _dl_lookup_symbol_x 0 0% 83.78% 5ms 1.03% opal_hwloc_base_get_topology 0 0% 83.78% 5ms 1.03% orte_ess_base_proc_binding 0 0% 83.78% 4ms 0.82% AbstractCardiacProblem::Initialise 1ms 0.21% 83.98% 4ms 0.82% BidomainSolver::SetupLinearSystem 0 0% 83.98% 4ms 0.82% CxxTest::RealWorldDescription::tearDown 0 0% 83.98% 4ms 0.82% KSPConvergedDefault 0 0% 83.98% 4ms 0.82% PetscFinalize 0 0% 83.98% 4ms 0.82% PetscSetup::tearDownWorld 0 0% 83.98% 4ms 0.82% PetscSetupUtils::CommonFinalize 2ms 0.41% 84.39% 4ms 0.82% VecCreate 4ms 0.82% 85.22% 4ms 0.82% __GI___clock_nanosleep 0 0% 85.22% 4ms 0.82% __GI___nanosleep 0 0% 85.22% 4ms 0.82% __GI_exit 0 0% 85.22% 4ms 0.82% __cxa_finalize 1ms 0.21% 85.42% 4ms 0.82% __ieee754_pow_fma 0 0% 85.42% 4ms 0.82% __pow 0 0% 85.42% 4ms 0.82% __run_exit_handlers 0 0% 85.42% 4ms 0.82% _dl_call_fini 0 0% 85.42% 4ms 0.82% _dl_fini 0 0% 85.42% 4ms 0.82% _dl_map_object_deps 1ms 0.21% 85.63% 4ms 0.82% _dl_runtime_resolve_xsavec 2ms 0.41% 86.04% 4ms 0.82% boost::serialization::detail::singleton_wrapper::~singleton_wrapper 0 0% 86.04% 4ms 0.82% boost::serialization::void_cast_detail::void_caster_primitive::void_caster_primitive (inline) 3ms 0.62% 86.65% 4ms 0.82% do_lookup_x 0 0% 86.65% 4ms 0.82% openaux 0 0% 86.65% 4ms 0.82% std::pow (inline) 0 0% 86.65% 4ms 0.82% usleep 0 0% 86.65% 3ms 0.62% DistributedTetrahedralMesh::ConstructFromMeshReader 1ms 0.21% 86.86% 3ms 0.62% PetscObjectComposeFunction_Petsc 0 0% 86.86% 3ms 0.62% PetscObjectComposeFunction_Private 0 0% 86.86% 3ms 0.62% XOpenDisplay 0 0% 86.86% 3ms 0.62% [hwloc_gl.so] 0 0% 86.86% 3ms 0.62% _GLOBAL__sub_I_ChasteParameters_3_4.cpp 0 0% 86.86% 3ms 0.62% _XConnectXCB 0 0% 86.86% 3ms 0.62% __GI_getaddrinfo 3ms 0.62% 87.47% 3ms 0.62% __mmap64 3ms 0.62% 88.09% 3ms 0.62% __strlen_avx2 0 0% 88.09% 3ms 0.62% _dl_fixup 0 0% 88.09% 3ms 0.62% _dl_map_object_from_fd 0 0% 88.09% 3ms 0.62% _dl_map_segments (inline) 1ms 0.21% 88.30% 3ms 0.62% _int_free 1ms 0.21% 88.50% 3ms 0.62% boost::serialization::void_cast_detail::void_caster::recursive_register 3ms 0.62% 89.12% 3ms 0.62% exp_inline (inline) 0 0% 89.12% 3ms 0.62% mca_base_component_repository_release 0 0% 89.12% 3ms 0.62% mca_base_component_var_register 0 0% 89.12% 3ms 0.62% mca_base_components_close 0 0% 89.12% 3ms 0.62% mca_base_framework_close 0 0% 89.12% 3ms 0.62% mca_base_var_generate_full_name4 0 0% 89.12% 3ms 0.62% mca_base_var_group_register 0 0% 89.12% 3ms 0.62% mca_base_var_register 0 0% 89.12% 3ms 0.62% ompi_mpi_finalize 3ms 0.62% 89.73% 3ms 0.62% top12 (inline) 0 0% 89.73% 3ms 0.62% xcb_connect_to_display_with_auth_info