File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3687ms, 86.69% of 4253ms total Dropped 495 nodes (cum <= 21.27ms) flat flat% sum% cum cum% 0 0% 0% 4243ms 99.76% __libc_start_call_main 0 0% 0% 4243ms 99.76% __libc_start_main_impl 0 0% 0% 4243ms 99.76% _start 0 0% 0% 4239ms 99.67% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4239ms 99.67% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4239ms 99.67% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4239ms 99.67% main 0 0% 0% 4196ms 98.66% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4196ms 98.66% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4196ms 98.66% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 2ms 0.047% 0.047% 4188ms 98.47% AbstractCardiacProblem::Solve 0 0% 0.047% 4163ms 97.88% AbstractDynamicLinearPdeSolver::Solve 26ms 0.61% 0.66% 2267ms 53.30% AbstractCardiacTissue::SolveCellSystems 4ms 0.094% 0.75% 1528ms 35.93% LinearSystem::Solve 0 0% 0.75% 1485ms 34.92% KSPSolve 5ms 0.12% 0.87% 1485ms 34.92% KSPSolve_Private 1ms 0.024% 0.89% 1427ms 33.55% KSPSolve_SYMMLQ 30ms 0.71% 1.60% 1274ms 29.96% AbstractCardiacCell::ComputeExceptVoltage 29ms 0.68% 2.28% 1099ms 25.84% AbstractOneStepIvpOdeSolver::InternalSolve 57ms 1.34% 3.62% 915ms 21.51% EulerIvpOdeSolver::CalculateNextYValue 4ms 0.094% 3.72% 889ms 20.90% PCApply 0 0% 3.72% 881ms 20.71% PCApply_BJacobi_Singleblock 214ms 5.03% 8.75% 845ms 19.87% CellLuoRudy1991FromCellML::EvaluateYDerivatives 381ms 8.96% 17.71% 783ms 18.41% __GI___exp 30ms 0.71% 18.41% 775ms 18.22% AbstractCardiacTissue::UpdateCaches (inline) 0 0% 18.41% 731ms 17.19% KSPSolve_PREONLY (partial-inline) 247ms 5.81% 24.22% 704ms 16.55% CellLuoRudy1991FromCellML::GetIIonic 7ms 0.16% 24.38% 672ms 15.80% MatSolve 0 0% 24.38% 672ms 15.80% PCApply_ICC 651ms 15.31% 39.69% 655ms 15.40% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 39.69% 636ms 14.95% KSP_PCApply.lto_priv.18 1ms 0.024% 39.71% 450ms 10.58% MatMult 9ms 0.21% 39.92% 442ms 10.39% MatMult_SeqAIJ (partial-inline) 425ms 9.99% 49.92% 441ms 10.37% MatMult_SeqAIJ_Inode (inline) 314ms 7.38% 57.30% 383ms 9.01% __ieee754_exp_fma 0 0% 57.30% 341ms 8.02% KSP_PCApply (partial-inline) 0 0% 57.30% 337ms 7.92% KSPConvergedDefault 64ms 1.50% 58.81% 313ms 7.36% BidomainSolver::SetupLinearSystem 2ms 0.047% 58.85% 233ms 5.48% std::pow (inline) 27ms 0.63% 59.49% 230ms 5.41% __pow 21ms 0.49% 59.98% 203ms 4.77% __ieee754_pow_fma 2ms 0.047% 60.03% 135ms 3.17% MatNullSpaceRemove 52ms 1.22% 61.25% 132ms 3.10% CellLuoRudy1991FromCellML::VerifyStateVariables 108ms 2.54% 63.79% 108ms 2.54% log_inline (inline) 24ms 0.56% 64.35% 102ms 2.40% MPI_Wtime 1ms 0.024% 64.38% 89ms 2.09% VecDuplicate 0 0% 64.38% 86ms 2.02% VecMDot 4ms 0.094% 64.47% 86ms 2.02% VecMXDot_Private 3ms 0.071% 64.54% 78ms 1.83% __GI___clock_gettime 14ms 0.33% 64.87% 75ms 1.76% PetscLogEventBeginDefault 75ms 1.76% 66.64% 75ms 1.76% [[vdso]] 23ms 0.54% 67.18% 71ms 1.67% TimeStepper::TimeStepper 60ms 1.41% 68.59% 63ms 1.48% exp_inline (inline) 44ms 1.03% 69.62% 62ms 1.46% top12 (inline) 7ms 0.16% 69.79% 59ms 1.39% PetscLogEventEndDefault 13ms 0.31% 70.09% 58ms 1.36% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 70.09% 57ms 1.34% VecDestroy 55ms 1.29% 71.38% 57ms 1.34% VecMDot_Seq 53ms 1.25% 72.63% 53ms 1.25% ddot_ 7ms 0.16% 72.80% 51ms 1.20% VecCopy 51ms 1.20% 73.99% 51ms 1.20% [libchaste_heart.so] 50ms 1.18% 75.17% 50ms 1.18% TimeStepper::CalculateNextTime 0 0% 75.17% 47ms 1.11% VecDuplicate_Seq 3ms 0.071% 75.24% 47ms 1.11% VecMAXPY 9ms 0.21% 75.45% 46ms 1.08% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 75.45% 46ms 1.08% AbstractBidomainSolver::FinaliseLinearSystem 46ms 1.08% 76.53% 46ms 1.08% __memcpy_avx_unaligned_erms 2ms 0.047% 76.58% 44ms 1.03% VecDot 1ms 0.024% 76.60% 43ms 1.01% VecNorm 3ms 0.071% 76.68% 41ms 0.96% VecDuplicate_MPI 0 0% 76.68% 39ms 0.92% CxxTest::RealWorldDescription::setUp 0 0% 76.68% 39ms 0.92% PMPI_Init_thread 0 0% 76.68% 39ms 0.92% PetscInitialize 0 0% 76.68% 39ms 0.92% PetscSetup::setUpWorld 0 0% 76.68% 39ms 0.92% PetscSetupUtils::CommonSetup 0 0% 76.68% 39ms 0.92% PetscSetupUtils::InitialisePetsc 39ms 0.92% 77.59% 39ms 0.92% asuint64 (inline) 0 0% 77.59% 39ms 0.92% ompi_mpi_init 1ms 0.024% 77.62% 38ms 0.89% VecAXPY 1ms 0.024% 77.64% 38ms 0.89% VecNorm_Seq 37ms 0.87% 78.51% 37ms 0.87% DistributedVector::Iterator::operator!= 21ms 0.49% 79.00% 35ms 0.82% AbstractOneStepIvpOdeSolver::Solve 4ms 0.094% 79.10% 33ms 0.78% PetscMallocA 5ms 0.12% 79.21% 33ms 0.78% VecCreate 33ms 0.78% 79.99% 33ms 0.78% std::isinf (inline) 0 0% 79.99% 32ms 0.75% 14ms 0.33% 80.32% 32ms 0.75% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 80.32% 32ms 0.75% VecDot_Seq 31ms 0.73% 81.05% 32ms 0.75% VecMAXPY_Seq 0 0% 81.05% 32ms 0.75% VecXDot_Seq_Private.constprop.0 32ms 0.75% 81.80% 32ms 0.75% __ieee754_log_fma 28ms 0.66% 82.46% 31ms 0.73% AbstractParameterisedSystem::SetAnyVariable 0 0% 82.46% 31ms 0.73% PetscMemcpy (inline) 27ms 0.63% 83.09% 30ms 0.71% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 2ms 0.047% 83.14% 29ms 0.68% PetscMallocAlign 3ms 0.071% 83.21% 28ms 0.66% VecSetType 9ms 0.21% 83.42% 27ms 0.63% __GI___libc_free 5ms 0.12% 83.54% 25ms 0.59% PetscFreeAlign 4ms 0.094% 83.64% 25ms 0.59% PetscHeaderDestroy_Private 0 0% 83.64% 25ms 0.59% VecCopy_Seq (partial-inline) 0 0% 83.64% 25ms 0.59% VecNorm_MPI 0 0% 83.64% 25ms 0.59% VecNorm_MPI_Default.constprop.0 22ms 0.52% 84.15% 24ms 0.56% AbstractParameterisedSystem::GetAnyVariable 24ms 0.56% 84.72% 24ms 0.56% RegularStimulus::GetStimulus 10ms 0.24% 84.95% 24ms 0.56% TimeStepper::AdvanceOneTimeStep 11ms 0.26% 85.21% 23ms 0.54% AbstractCardiacCell::GetVoltage (partial-inline) 0 0% 85.21% 23ms 0.54% orte_init 16ms 0.38% 85.59% 23ms 0.54% std::__cxx11::basic_string::basic_string 23ms 0.54% 86.13% 23ms 0.54% std::vector::operator[] (inline) 22ms 0.52% 86.64% 22ms 0.52% DistributedVector::Stripe::operator[] (inline) 2ms 0.047% 86.69% 22ms 0.52% VecCreate_MPI_Private 0 0% 86.69% 22ms 0.52% std::vector::_M_assign_aux (inline) 0 0% 86.69% 22ms 0.52% std::vector::assign (inline)