File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3548ms, 86.52% of 4101ms total Dropped 456 nodes (cum <= 20.50ms) flat flat% sum% cum cum% 0 0% 0% 4095ms 99.85% __libc_start_call_main 0 0% 0% 4095ms 99.85% __libc_start_main_impl 0 0% 0% 4095ms 99.85% _start 0 0% 0% 4092ms 99.78% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4092ms 99.78% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4092ms 99.78% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4092ms 99.78% main 0 0% 0% 4056ms 98.90% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4056ms 98.90% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4056ms 98.90% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4049ms 98.73% AbstractCardiacProblem::Solve 0 0% 0% 4037ms 98.44% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 2136ms 52.08% LinearSystem::Solve 0 0% 0% 2092ms 51.01% KSPSolve 7ms 0.17% 0.17% 2092ms 51.01% KSPSolve_Private 2ms 0.049% 0.22% 2041ms 49.77% KSPSolve_SYMMLQ 12ms 0.29% 0.51% 1591ms 38.80% AbstractCardiacTissue::SolveCellSystems 3ms 0.073% 0.59% 1295ms 31.58% PCApply 1ms 0.024% 0.61% 1282ms 31.26% PCApply_BJacobi_Singleblock 0 0% 0.61% 1083ms 26.41% KSPSolve_PREONLY (partial-inline) 2ms 0.049% 0.66% 1016ms 24.77% PCApply_ICC 5ms 0.12% 0.78% 1014ms 24.73% MatSolve 993ms 24.21% 24.99% 1001ms 24.41% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 24.99% 953ms 23.24% KSP_PCApply.lto_priv.18 23ms 0.56% 25.55% 911ms 22.21% AbstractCardiacCell::ComputeExceptVoltage 15ms 0.37% 25.92% 767ms 18.70% AbstractOneStepIvpOdeSolver::InternalSolve 50ms 1.22% 27.14% 656ms 16.00% EulerIvpOdeSolver::CalculateNextYValue 175ms 4.27% 31.41% 596ms 14.53% CellLuoRudy1991FromCellML::EvaluateYDerivatives 235ms 5.73% 37.14% 554ms 13.51% __GI___exp 14ms 0.34% 37.48% 547ms 13.34% AbstractCardiacTissue::UpdateCaches (inline) 166ms 4.05% 41.53% 514ms 12.53% CellLuoRudy1991FromCellML::GetIIonic 7ms 0.17% 41.70% 505ms 12.31% MatMult 5ms 0.12% 41.82% 489ms 11.92% MatMult_SeqAIJ 482ms 11.75% 53.57% 488ms 11.90% MatMult_SeqAIJ_Inode (inline) 0 0% 53.57% 482ms 11.75% KSPConvergedDefault 0 0% 53.57% 450ms 10.97% KSP_PCApply (partial-inline) 292ms 7.12% 60.69% 307ms 7.49% __ieee754_exp_fma 43ms 1.05% 61.74% 263ms 6.41% BidomainSolver::SetupLinearSystem 3ms 0.073% 61.81% 173ms 4.22% std::pow (inline) 17ms 0.41% 62.23% 170ms 4.15% __pow 2ms 0.049% 62.28% 168ms 4.10% MatNullSpaceRemove 17ms 0.41% 62.69% 153ms 3.73% __ieee754_pow_fma 4ms 0.098% 62.79% 140ms 3.41% VecDuplicate 105ms 2.56% 65.35% 105ms 2.56% ddot_ 0 0% 65.35% 100ms 2.44% VecMDot 4ms 0.098% 65.45% 100ms 2.44% VecMXDot_Private 17ms 0.41% 65.86% 99ms 2.41% MPI_Wtime 47ms 1.15% 67.01% 92ms 2.24% CellLuoRudy1991FromCellML::VerifyStateVariables 25ms 0.61% 67.62% 92ms 2.24% PetscLogEventEndDefault 1ms 0.024% 67.64% 82ms 2.00% __GI___clock_gettime 81ms 1.98% 69.62% 81ms 1.98% [[vdso]] 16ms 0.39% 70.01% 80ms 1.95% PetscLogEventBeginDefault 3ms 0.073% 70.08% 76ms 1.85% VecDuplicate_MPI 7ms 0.17% 70.25% 75ms 1.83% VecCopy 71ms 1.73% 71.98% 71ms 1.73% log_inline (inline) 3ms 0.073% 72.06% 69ms 1.68% VecDestroy 0 0% 72.06% 68ms 1.66% VecDot 2ms 0.049% 72.10% 67ms 1.63% VecNorm 6ms 0.15% 72.25% 66ms 1.61% VecMAXPY 62ms 1.51% 73.76% 63ms 1.54% exp_inline (inline) 59ms 1.44% 75.20% 61ms 1.49% VecMDot_Seq 6ms 0.15% 75.35% 60ms 1.46% PetscMallocA 0 0% 75.35% 60ms 1.46% VecDuplicate_Seq 0 0% 75.35% 59ms 1.44% KSP_RemoveNullSpace (inline) 3ms 0.073% 75.42% 59ms 1.44% VecCreate 0 0% 75.42% 59ms 1.44% VecDot_Seq 0 0% 75.42% 59ms 1.44% VecXDot_Seq_Private.constprop.0 0 0% 75.42% 56ms 1.37% VecNorm_Seq 0 0% 75.42% 55ms 1.34% PetscMallocAlign (partial-inline) 53ms 1.29% 76.71% 53ms 1.29% __memcpy_avx_unaligned_erms 0 0% 76.71% 47ms 1.15% PetscMemcpy (inline) 5ms 0.12% 76.83% 47ms 1.15% VecAXPY 37ms 0.9% 77.74% 43ms 1.05% AbstractOneStepIvpOdeSolver::Solve 18ms 0.44% 78.18% 43ms 1.05% TimeStepper::TimeStepper 1ms 0.024% 78.20% 41ms 1% AbstractBidomainSolver::FinaliseLinearSystem 4ms 0.098% 78.30% 41ms 1% VecCreate_MPI_Private 7ms 0.17% 78.47% 40ms 0.98% AbstractBidomainSolver::CheckCompatibilityCondition 35ms 0.85% 79.32% 37ms 0.9% VecMAXPY_Seq 3ms 0.073% 79.40% 36ms 0.88% __posix_memalign 5ms 0.12% 79.52% 35ms 0.85% __GI___libc_malloc 3ms 0.073% 79.59% 34ms 0.83% PetscHeaderDestroy_Private 0 0% 79.59% 34ms 0.83% VecCopy_Seq (partial-inline) 0 0% 79.59% 31ms 0.76% CxxTest::RealWorldDescription::setUp 0 0% 79.59% 31ms 0.76% PetscInitialize 0 0% 79.59% 31ms 0.76% PetscSetup::setUpWorld 0 0% 79.59% 31ms 0.76% PetscSetupUtils::CommonSetup 0 0% 79.59% 31ms 0.76% PetscSetupUtils::InitialisePetsc 31ms 0.76% 80.35% 31ms 0.76% TimeStepper::CalculateNextTime 0 0% 80.35% 30ms 0.73% PMPI_Init_thread 0 0% 80.35% 30ms 0.73% ompi_mpi_init 27ms 0.66% 81.00% 29ms 0.71% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 3ms 0.073% 81.08% 29ms 0.71% VecSetType 29ms 0.71% 81.78% 29ms 0.71% [libchaste_heart.so] 0 0% 81.78% 28ms 0.68% VecNorm_MPI 1ms 0.024% 81.81% 28ms 0.68% VecNorm_MPI_Default.constprop.0 1ms 0.024% 81.83% 27ms 0.66% 16ms 0.39% 82.22% 27ms 0.66% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 7ms 0.17% 82.39% 26ms 0.63% AbstractCardiacCell::SetVoltage (partial-inline) 5ms 0.12% 82.52% 26ms 0.63% PetscHeaderCreate_Private 21ms 0.51% 83.03% 26ms 0.63% PetscStageLogGetCurrent 25ms 0.61% 83.64% 26ms 0.63% __ieee754_log_fma 25ms 0.61% 84.25% 25ms 0.61% DistributedVector::Iterator::operator!= 0 0% 84.25% 25ms 0.61% PetscMemzero (inline) 15ms 0.37% 84.61% 25ms 0.61% _int_malloc 1ms 0.024% 84.64% 24ms 0.59% VecAXPY_Seq 24ms 0.59% 85.22% 24ms 0.59% __memset_avx2_unaligned_erms 6ms 0.15% 85.37% 23ms 0.56% PetscOptionsFindPair 0 0% 85.37% 23ms 0.56% VecScale 1ms 0.024% 85.39% 22ms 0.54% VecDestroy_MPI 0 0% 85.39% 22ms 0.54% orte_init 0 0% 85.39% 21ms 0.51% AbstractFeVolumeIntegralAssembler::DoAssemble 4ms 0.098% 85.49% 21ms 0.51% PMPI_Comm_get_attr 21ms 0.51% 86.00% 21ms 0.51% daxpy_ 21ms 0.51% 86.52% 21ms 0.51% std::isinf (inline)