File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109205ms, 91.86% of 118884ms total Dropped 1126 nodes (cum <= 594.42ms) flat flat% sum% cum cum% 0 0% 0% 118861ms 100% __libc_start_call_main 0 0% 0% 118861ms 100% __libc_start_main_impl 0 0% 0% 118861ms 100% _start 0 0% 0% 118858ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 118858ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 118858ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 118858ms 100% main 0 0% 0% 118825ms 100% CxxTest::RealTestDescription::run 0 0% 0% 118825ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 118825ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 118825ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 118825ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 118824ms 99.95% AbstractConvergenceTester::Converge 5ms 0.0042% 0.0042% 117596ms 98.92% AbstractCardiacProblem::Solve 9ms 0.0076% 0.012% 116895ms 98.33% AbstractDynamicLinearPdeSolver::Solve 6ms 0.005% 0.017% 65023ms 54.69% LinearSystem::Solve 2ms 0.0017% 0.019% 64533ms 54.28% KSPSolve 6ms 0.005% 0.024% 64531ms 54.28% KSPSolve_Private 6ms 0.005% 0.029% 64150ms 53.96% KSPSolve_SYMMLQ 182ms 0.15% 0.18% 43208ms 36.34% AbstractCardiacTissue::SolveCellSystems 0 0% 0.18% 36942ms 31.07% PCApply 6ms 0.005% 0.19% 36934ms 31.07% PCApply_BJacobi_Singleblock 0 0% 0.19% 34448ms 28.98% KSPSolve_PREONLY (partial-inline) 1ms 0.00084% 0.19% 33402ms 28.10% PCApply_ICC 5ms 0.0042% 0.19% 33401ms 28.10% MatSolve 32893ms 27.67% 27.86% 33396ms 28.09% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1374ms 1.16% 29.02% 33299ms 28.01% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 29.02% 31866ms 26.80% KSP_PCApply.lto_priv.18 6854ms 5.77% 34.78% 28930ms 24.33% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 6ms 0.005% 34.79% 21512ms 18.09% MatMult 250ms 0.21% 35.00% 21506ms 18.09% MatMult_SeqAIJ (partial-inline) 20986ms 17.65% 52.65% 21506ms 18.09% MatMult_SeqAIJ_Inode (inline) 2055ms 1.73% 54.38% 15099ms 12.70% CardiacNewtonSolver::Solve 328ms 0.28% 54.65% 9100ms 7.65% AbstractCardiacTissue::UpdateCaches (inline) 4514ms 3.80% 58.45% 8782ms 7.39% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1950ms 1.64% 60.09% 8577ms 7.21% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1376ms 1.16% 61.25% 7681ms 6.46% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1102ms 0.93% 62.18% 7661ms 6.44% BidomainSolver::SetupLinearSystem 2ms 0.0017% 62.18% 7008ms 5.89% KSP_PCApply (partial-inline) 4ms 0.0034% 62.18% 6457ms 5.43% KSPConvergedDefault 6037ms 5.08% 67.26% 6037ms 5.08% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 4031ms 3.39% 70.65% 4079ms 3.43% __ieee754_log_fma 0 0% 70.65% 3837ms 3.23% boost::numeric::ublas::norm_inf (inline) 2514ms 2.11% 72.77% 3837ms 3.23% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.77% 3837ms 3.23% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.77% 3837ms 3.23% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 7ms 0.0059% 72.77% 3296ms 2.77% MatNullSpaceRemove 30ms 0.025% 72.80% 3153ms 2.65% std::pow (inline) 408ms 0.34% 73.14% 3121ms 2.63% __pow 2948ms 2.48% 75.62% 2948ms 2.48% __memcpy_avx_unaligned_erms 0 0% 75.62% 2909ms 2.45% PetscMemcpy (inline) 1707ms 1.44% 77.05% 2826ms 2.38% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2791ms 2.35% 79.40% 2791ms 2.35% ddot_ 378ms 0.32% 79.72% 2698ms 2.27% __ieee754_pow_fma 18ms 0.015% 79.74% 2441ms 2.05% VecCopy 7ms 0.0059% 79.74% 2423ms 2.04% VecCopy_Seq (partial-inline) 22ms 0.019% 79.76% 2375ms 2.00% VecAXPY 7ms 0.0059% 79.77% 2353ms 1.98% VecAXPY_Seq 2334ms 1.96% 81.73% 2334ms 1.96% daxpy_ 7ms 0.0059% 81.74% 2266ms 1.91% VecDot 0 0% 81.74% 2259ms 1.90% VecDot_Seq 2ms 0.0017% 81.74% 2259ms 1.90% VecXDot_Seq_Private.constprop.0 3ms 0.0025% 81.74% 2079ms 1.75% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 81.74% 1856ms 1.56% VecMDot 8ms 0.0067% 81.75% 1856ms 1.56% VecMXDot_Private 1839ms 1.55% 83.29% 1846ms 1.55% VecMDot_Seq 35ms 0.029% 83.32% 1731ms 1.46% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1522ms 1.28% 84.60% 1601ms 1.35% exp_inline (inline) 7ms 0.0059% 84.61% 1433ms 1.21% VecMAXPY 1417ms 1.19% 85.80% 1426ms 1.20% VecMAXPY_Seq 0 0% 85.80% 1419ms 1.19% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1409ms 1.19% 86.99% 1409ms 1.19% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.99% 1229ms 1.03% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.99% 1229ms 1.03% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.99% 1229ms 1.03% boost_numeric_ublas_abs (inline) 1229ms 1.03% 88.02% 1229ms 1.03% std::abs (inline) 10ms 0.0084% 88.03% 1129ms 0.95% boost::numeric::ublas::matrix_assign (inline) 237ms 0.2% 88.23% 1114ms 0.94% boost::numeric::ublas::indexing_matrix_assign 0 0% 88.23% 1082ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 0 0% 88.23% 1082ms 0.91% CuboidMeshConstructor::Construct 1ms 0.00084% 88.23% 1082ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 816ms 0.69% 88.91% 1067ms 0.9% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 1065ms 0.9% 89.81% 1065ms 0.9% __memset_avx2_unaligned_erms 0 0% 89.81% 1048ms 0.88% PetscMemzero (inline) 3ms 0.0025% 89.81% 1039ms 0.87% KSP_RemoveNullSpace (inline) 4ms 0.0034% 89.82% 983ms 0.83% Element::Element 3ms 0.0025% 89.82% 973ms 0.82% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.82% 939ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 7ms 0.0059% 89.83% 867ms 0.73% BidomainAssembler::ComputeMatrixTerm 6ms 0.005% 89.83% 867ms 0.73% boost::numeric::ublas::c_matrix::c_matrix (inline) 3ms 0.0025% 89.83% 865ms 0.73% VecDuplicate 2ms 0.0017% 89.84% 803ms 0.68% VecNorm 798ms 0.67% 90.51% 798ms 0.67% [libchaste_heart.so] 0 0% 90.51% 794ms 0.67% VecNorm_Seq 7ms 0.0059% 90.51% 785ms 0.66% VecScale 2ms 0.0017% 90.51% 778ms 0.65% VecScale_Seq 772ms 0.65% 91.16% 772ms 0.65% dscal_ 18ms 0.015% 91.18% 739ms 0.62% PetscMallocA 8ms 0.0067% 91.19% 721ms 0.61% PetscMallocAlign (partial-inline) 1ms 0.00084% 91.19% 692ms 0.58% AbstractBidomainSolver::FinaliseLinearSystem 124ms 0.1% 91.29% 689ms 0.58% AbstractBidomainSolver::CheckCompatibilityCondition 674ms 0.57% 91.86% 674ms 0.57% log_inline (inline) 0 0% 91.86% 660ms 0.56% AbstractFeAssemblerInterface::Assemble (inline) 1ms 0.00084% 91.86% 649ms 0.55% BidomainProblem::WriteOneStep