File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 2078ms, 87.38% of 2378ms total Dropped 383 nodes (cum <= 11.89ms) flat flat% sum% cum cum% 0 0% 0% 2370ms 99.66% __libc_start_call_main 0 0% 0% 2370ms 99.66% __libc_start_main_impl 0 0% 0% 2370ms 99.66% _start 0 0% 0% 2367ms 99.54% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 2367ms 99.54% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 2367ms 99.54% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 2367ms 99.54% main 0 0% 0% 2338ms 98.32% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 2338ms 98.32% CxxTest::TestRunner::runTest (inline) 0 0% 0% 2338ms 98.32% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.042% 0.042% 2333ms 98.11% AbstractCardiacProblem::Solve 0 0% 0.042% 2326ms 97.81% AbstractDynamicLinearPdeSolver::Solve 10ms 0.42% 0.46% 1056ms 44.41% AbstractCardiacTissue::SolveCellSystems 0 0% 0.46% 997ms 41.93% LinearSystem::Solve 0 0% 0.46% 970ms 40.79% KSPSolve 4ms 0.17% 0.63% 970ms 40.79% KSPSolve_Private 1ms 0.042% 0.67% 939ms 39.49% KSPSolve_SYMMLQ 12ms 0.5% 1.18% 597ms 25.11% AbstractCardiacCell::ComputeExceptVoltage 3ms 0.13% 1.30% 555ms 23.34% PCApply 0 0% 1.30% 549ms 23.09% PCApply_BJacobi_Singleblock 8ms 0.34% 1.64% 520ms 21.87% AbstractOneStepIvpOdeSolver::InternalSolve 33ms 1.39% 3.03% 459ms 19.30% EulerIvpOdeSolver::CalculateNextYValue 1ms 0.042% 3.07% 453ms 19.05% KSPSolve_PREONLY (partial-inline) 126ms 5.30% 8.37% 421ms 17.70% CellLuoRudy1991FromCellML::EvaluateYDerivatives 5ms 0.21% 8.58% 416ms 17.49% MatSolve 0 0% 8.58% 416ms 17.49% PCApply_ICC 0 0% 8.58% 409ms 17.20% KSP_PCApply.lto_priv.18 403ms 16.95% 25.53% 404ms 16.99% MatSolve_SeqSBAIJ_1_NaturalOrdering 145ms 6.10% 31.62% 370ms 15.56% __GI___exp 3ms 0.13% 31.75% 369ms 15.52% AbstractCardiacTissue::UpdateCaches (inline) 136ms 5.72% 37.47% 357ms 15.01% CellLuoRudy1991FromCellML::GetIIonic 3ms 0.13% 37.59% 343ms 14.42% MatMult 26ms 1.09% 38.69% 339ms 14.26% MatMult_SeqAIJ 313ms 13.16% 51.85% 314ms 13.20% MatMult_SeqAIJ_Inode (inline) 36ms 1.51% 53.36% 227ms 9.55% BidomainSolver::SetupLinearSystem 175ms 7.36% 60.72% 207ms 8.70% __ieee754_exp_fma 0 0% 60.72% 200ms 8.41% KSPConvergedDefault 0 0% 60.72% 198ms 8.33% KSP_PCApply (partial-inline) 16ms 0.67% 61.40% 120ms 5.05% __pow 0 0% 61.40% 120ms 5.05% std::pow (inline) 12ms 0.5% 61.90% 104ms 4.37% __ieee754_pow_fma 0 0% 61.90% 98ms 4.12% MatNullSpaceRemove 18ms 0.76% 62.66% 84ms 3.53% MPI_Wtime 0 0% 62.66% 66ms 2.78% VecMDot 0 0% 62.66% 66ms 2.78% VecMXDot_Private 1ms 0.042% 62.70% 66ms 2.78% __GI___clock_gettime 65ms 2.73% 65.43% 65ms 2.73% [[vdso]] 0 0% 65.43% 61ms 2.57% VecDuplicate 36ms 1.51% 66.95% 60ms 2.52% CellLuoRudy1991FromCellML::VerifyStateVariables 55ms 2.31% 69.26% 55ms 2.31% log_inline (inline) 12ms 0.5% 69.76% 53ms 2.23% PetscLogEventEndDefault 3ms 0.13% 69.89% 48ms 2.02% PetscLogEventBeginDefault 43ms 1.81% 71.70% 44ms 1.85% VecMDot_Seq 13ms 0.55% 72.25% 43ms 1.81% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 72.25% 43ms 1.81% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.042% 72.29% 41ms 1.72% VecDuplicate_MPI 40ms 1.68% 73.97% 40ms 1.68% ddot_ 4ms 0.17% 74.14% 35ms 1.47% VecCopy 0 0% 74.14% 35ms 1.47% VecDot 29ms 1.22% 75.36% 33ms 1.39% exp_inline (inline) 0 0% 75.36% 32ms 1.35% VecMAXPY 31ms 1.30% 76.66% 31ms 1.30% DistributedVector::Iterator::operator!= 0 0% 76.66% 31ms 1.30% VecDot_Seq 0 0% 76.66% 31ms 1.30% VecXDot_Seq_Private.constprop.0 20ms 0.84% 77.50% 31ms 1.30% top12 (inline) 0 0% 77.50% 28ms 1.18% CxxTest::RealWorldDescription::setUp 0 0% 77.50% 28ms 1.18% PetscInitialize 0 0% 77.50% 28ms 1.18% PetscSetup::setUpWorld 0 0% 77.50% 28ms 1.18% PetscSetupUtils::CommonSetup 0 0% 77.50% 28ms 1.18% PetscSetupUtils::InitialisePetsc 0 0% 77.50% 27ms 1.14% PMPI_Init_thread 0 0% 77.50% 27ms 1.14% VecDestroy 0 0% 77.50% 27ms 1.14% ompi_mpi_init 1ms 0.042% 77.54% 26ms 1.09% VecAXPY 7ms 0.29% 77.84% 25ms 1.05% PetscMallocA 0 0% 77.84% 25ms 1.05% VecCreate 1ms 0.042% 77.88% 23ms 0.97% 13ms 0.55% 78.43% 23ms 0.97% TimeStepper::TimeStepper 22ms 0.93% 79.35% 22ms 0.93% [libchaste_heart.so] 3ms 0.13% 79.48% 21ms 0.88% VecCreate_MPI_Private 11ms 0.46% 79.94% 20ms 0.84% AbstractOneStepIvpOdeSolver::Solve 0 0% 79.94% 20ms 0.84% VecDuplicate_Seq 20ms 0.84% 80.78% 20ms 0.84% asuint64 (inline) 2ms 0.084% 80.87% 19ms 0.8% PMPI_Comm_get_attr 0 0% 80.87% 19ms 0.8% orte_init 5ms 0.21% 81.08% 18ms 0.76% AbstractCardiacCell::SetVoltage (partial-inline) 14ms 0.59% 81.67% 18ms 0.76% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 1ms 0.042% 81.71% 18ms 0.76% PetscMallocAlign 16ms 0.67% 82.38% 18ms 0.76% VecMAXPY_Seq 18ms 0.76% 83.14% 18ms 0.76% [libm.so.6] 1ms 0.042% 83.18% 17ms 0.71% VecNorm 3ms 0.13% 83.31% 17ms 0.71% ompi_attr_get_c 6ms 0.25% 83.56% 16ms 0.67% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 15ms 0.63% 84.19% 15ms 0.63% __ieee754_log_fma 13ms 0.55% 84.74% 14ms 0.59% AbstractParameterisedSystem::GetAnyVariable 14ms 0.59% 85.32% 14ms 0.59% __memcpy_avx512_unaligned_erms 1ms 0.042% 85.37% 14ms 0.59% __posix_memalign 0 0% 85.37% 13ms 0.55% AbstractFeVolumeIntegralAssembler::DoAssemble 0 0% 85.37% 13ms 0.55% PetscHeaderCreate_Private 0 0% 85.37% 13ms 0.55% VecAXPY_Seq 7ms 0.29% 85.66% 13ms 0.55% __GI___libc_malloc 0 0% 85.66% 13ms 0.55% hwloc_topology_load 12ms 0.5% 86.16% 12ms 0.5% AbstractParameterisedSystem::SetAnyVariable 12ms 0.5% 86.67% 12ms 0.5% PdeSimulationTime::GetPdeTimeStepInverse 2ms 0.084% 86.75% 12ms 0.5% PetscFreeAlign 0 0% 86.75% 12ms 0.5% PetscMemcpy (inline) 0 0% 86.75% 12ms 0.5% VecNorm_Seq 0 0% 86.75% 12ms 0.5% VecStashCreate_Private 3ms 0.13% 86.88% 12ms 0.5% __GI___libc_free 12ms 0.5% 87.38% 12ms 0.5% daxpy_ 0 0% 87.38% 12ms 0.5% hwloc_linux_get_tid_last_cpu_location