File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3761ms, 87.59% of 4294ms total Dropped 465 nodes (cum <= 21.47ms) flat flat% sum% cum cum% 0 0% 0% 4282ms 99.72% __libc_start_call_main 0 0% 0% 4282ms 99.72% __libc_start_main_impl 0 0% 0% 4282ms 99.72% _start 0 0% 0% 4279ms 99.65% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4279ms 99.65% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4279ms 99.65% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4279ms 99.65% main 0 0% 0% 4242ms 98.79% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4242ms 98.79% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4242ms 98.79% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 4ms 0.093% 0.093% 4235ms 98.63% AbstractCardiacProblem::Solve 2ms 0.047% 0.14% 4217ms 98.21% AbstractDynamicLinearPdeSolver::Solve 19ms 0.44% 0.58% 2287ms 53.26% AbstractCardiacTissue::SolveCellSystems 1ms 0.023% 0.61% 1527ms 35.56% LinearSystem::Solve 0 0% 0.61% 1473ms 34.30% KSPSolve 3ms 0.07% 0.68% 1473ms 34.30% KSPSolve_Private 1ms 0.023% 0.7% 1428ms 33.26% KSPSolve_SYMMLQ 22ms 0.51% 1.21% 1291ms 30.07% AbstractCardiacCell::ComputeExceptVoltage 30ms 0.7% 1.91% 1085ms 25.27% AbstractOneStepIvpOdeSolver::InternalSolve 54ms 1.26% 3.17% 912ms 21.24% EulerIvpOdeSolver::CalculateNextYValue 3ms 0.07% 3.24% 883ms 20.56% PCApply 1ms 0.023% 3.26% 876ms 20.40% PCApply_BJacobi_Singleblock 229ms 5.33% 8.59% 851ms 19.82% CellLuoRudy1991FromCellML::EvaluateYDerivatives 35ms 0.82% 9.41% 798ms 18.58% AbstractCardiacTissue::UpdateCaches (inline) 401ms 9.34% 18.75% 795ms 18.51% __GI___exp 0 0% 18.75% 758ms 17.65% KSPSolve_PREONLY (partial-inline) 254ms 5.92% 24.66% 724ms 16.86% CellLuoRudy1991FromCellML::GetIIonic 2ms 0.047% 24.71% 698ms 16.26% MatSolve 0 0% 24.71% 698ms 16.26% PCApply_ICC 686ms 15.98% 40.68% 687ms 16.00% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 40.68% 555ms 12.93% KSP_PCApply.lto_priv.18 2ms 0.047% 40.73% 468ms 10.90% MatMult 15ms 0.35% 41.08% 459ms 10.69% MatMult_SeqAIJ (partial-inline) 443ms 10.32% 51.40% 457ms 10.64% MatMult_SeqAIJ_Inode (inline) 4ms 0.093% 51.49% 407ms 9.48% KSPConvergedDefault 1ms 0.023% 51.51% 404ms 9.41% KSP_PCApply (partial-inline) 314ms 7.31% 58.83% 370ms 8.62% __ieee754_exp_fma 73ms 1.70% 60.53% 343ms 7.99% BidomainSolver::SetupLinearSystem 19ms 0.44% 60.97% 225ms 5.24% __pow 0 0% 60.97% 225ms 5.24% std::pow (inline) 20ms 0.47% 61.43% 206ms 4.80% __ieee754_pow_fma 69ms 1.61% 63.04% 131ms 3.05% CellLuoRudy1991FromCellML::VerifyStateVariables 2ms 0.047% 63.09% 124ms 2.89% MatNullSpaceRemove 101ms 2.35% 65.44% 101ms 2.35% log_inline (inline) 15ms 0.35% 65.79% 92ms 2.14% MPI_Wtime 0 0% 65.79% 77ms 1.79% VecMDot 7ms 0.16% 65.95% 77ms 1.79% VecMXDot_Private 1ms 0.023% 65.98% 77ms 1.79% __GI___clock_gettime 76ms 1.77% 67.75% 76ms 1.77% [[vdso]] 76ms 1.77% 69.52% 76ms 1.77% exp_inline (inline) 0 0% 69.52% 75ms 1.75% VecDuplicate 14ms 0.33% 69.84% 66ms 1.54% PetscLogEventEndDefault 26ms 0.61% 70.45% 66ms 1.54% TimeStepper::TimeStepper 14ms 0.33% 70.77% 64ms 1.49% AbstractCardiacCell::SetVoltage (partial-inline) 62ms 1.44% 72.22% 62ms 1.44% ddot_ 10ms 0.23% 72.45% 61ms 1.42% PetscLogEventBeginDefault 8ms 0.19% 72.64% 57ms 1.33% VecCopy 2ms 0.047% 72.68% 56ms 1.30% VecNorm 56ms 1.30% 73.99% 56ms 1.30% [libchaste_heart.so] 1ms 0.023% 74.01% 51ms 1.19% VecDestroy 32ms 0.75% 74.76% 50ms 1.16% AbstractOneStepIvpOdeSolver::Solve 4ms 0.093% 74.85% 50ms 1.16% VecAXPY 2ms 0.047% 74.90% 49ms 1.14% AbstractBidomainSolver::FinaliseLinearSystem 42ms 0.98% 75.87% 49ms 1.14% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 41ms 0.95% 76.83% 49ms 1.14% top12 (inline) 7ms 0.16% 76.99% 47ms 1.09% AbstractBidomainSolver::CheckCompatibilityCondition 45ms 1.05% 78.04% 47ms 1.09% VecMDot_Seq 3ms 0.07% 78.11% 45ms 1.05% VecMAXPY 2ms 0.047% 78.16% 45ms 1.05% VecNorm_Seq 36ms 0.84% 78.99% 44ms 1.02% AbstractParameterisedSystem::SetAnyVariable 42ms 0.98% 79.97% 42ms 0.98% __memcpy_avx_unaligned_erms 40ms 0.93% 80.90% 40ms 0.93% TimeStepper::CalculateNextTime 0 0% 80.90% 40ms 0.93% VecDot 0 0% 80.90% 39ms 0.91% KSP_RemoveNullSpace (inline) 2ms 0.047% 80.95% 38ms 0.88% VecDuplicate_MPI 37ms 0.86% 81.81% 37ms 0.86% DistributedVector::Iterator::operator!= 0 0% 81.81% 37ms 0.86% VecDuplicate_Seq 34ms 0.79% 82.60% 35ms 0.82% __ieee754_log_fma 0 0% 82.60% 34ms 0.79% VecDot_Seq 0 0% 82.60% 34ms 0.79% VecXDot_Seq_Private.constprop.0 1ms 0.023% 82.63% 33ms 0.77% 10ms 0.23% 82.86% 33ms 0.77% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 82.86% 33ms 0.77% CxxTest::RealWorldDescription::setUp 0 0% 82.86% 33ms 0.77% PMPI_Init_thread 0 0% 82.86% 33ms 0.77% PetscInitialize 0 0% 82.86% 33ms 0.77% PetscSetup::setUpWorld 0 0% 82.86% 33ms 0.77% PetscSetupUtils::CommonSetup 0 0% 82.86% 33ms 0.77% PetscSetupUtils::InitialisePetsc 0 0% 82.86% 33ms 0.77% ompi_mpi_init 0 0% 82.86% 32ms 0.75% PetscMemcpy (inline) 0 0% 82.86% 30ms 0.7% VecCopy_Seq (partial-inline) 27ms 0.63% 83.49% 29ms 0.68% VecMAXPY_Seq 0 0% 83.49% 29ms 0.68% VecNorm_MPI 0 0% 83.49% 29ms 0.68% VecNorm_MPI_Default.constprop.0 5ms 0.12% 83.61% 28ms 0.65% PetscMallocA 1ms 0.023% 83.63% 28ms 0.65% VecCreate 21ms 0.49% 84.12% 27ms 0.63% AbstractParameterisedSystem::GetAnyVariable 2ms 0.047% 84.16% 27ms 0.63% PetscHeaderDestroy_Private 1ms 0.023% 84.19% 26ms 0.61% VecAXPY_Seq 25ms 0.58% 84.77% 25ms 0.58% asuint64 (inline) 3ms 0.07% 84.84% 24ms 0.56% VecSetType 24ms 0.56% 85.40% 24ms 0.56% [libm.so.6] 24ms 0.56% 85.96% 24ms 0.56% daxpy_ 2ms 0.047% 86.00% 23ms 0.54% PetscMallocAlign 0 0% 86.00% 23ms 0.54% orte_init 23ms 0.54% 86.54% 23ms 0.54% std::isinf (inline) 23ms 0.54% 87.07% 23ms 0.54% std::vector::operator[] (inline) 22ms 0.51% 87.59% 22ms 0.51% RegularStimulus::GetStimulus