File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3737ms, 86.42% of 4324ms total Dropped 486 nodes (cum <= 21.62ms) flat flat% sum% cum cum% 0 0% 0% 4315ms 99.79% __libc_start_call_main 0 0% 0% 4315ms 99.79% __libc_start_main_impl 0 0% 0% 4315ms 99.79% _start 0 0% 0% 4312ms 99.72% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4312ms 99.72% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4312ms 99.72% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4312ms 99.72% main 0 0% 0% 4269ms 98.73% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4269ms 98.73% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4269ms 98.73% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 3ms 0.069% 0.069% 4263ms 98.59% AbstractCardiacProblem::Solve 0 0% 0.069% 4251ms 98.31% AbstractDynamicLinearPdeSolver::Solve 24ms 0.56% 0.62% 2178ms 50.37% AbstractCardiacTissue::SolveCellSystems 3ms 0.069% 0.69% 1684ms 38.95% LinearSystem::Solve 0 0% 0.69% 1628ms 37.65% KSPSolve 3ms 0.069% 0.76% 1628ms 37.65% KSPSolve_Private 1ms 0.023% 0.79% 1582ms 36.59% KSPSolve_SYMMLQ 20ms 0.46% 1.25% 1237ms 28.61% AbstractCardiacCell::ComputeExceptVoltage 30ms 0.69% 1.94% 1062ms 24.56% AbstractOneStepIvpOdeSolver::InternalSolve 4ms 0.093% 2.04% 1030ms 23.82% PCApply 0 0% 2.04% 1017ms 23.52% PCApply_BJacobi_Singleblock 42ms 0.97% 3.01% 884ms 20.44% EulerIvpOdeSolver::CalculateNextYValue 0 0% 3.01% 860ms 19.89% KSPSolve_PREONLY (partial-inline) 213ms 4.93% 7.93% 834ms 19.29% CellLuoRudy1991FromCellML::EvaluateYDerivatives 0 0% 7.93% 810ms 18.73% KSP_PCApply.lto_priv.18 3ms 0.069% 8.00% 802ms 18.55% MatSolve 0 0% 8.00% 802ms 18.55% PCApply_ICC 787ms 18.20% 26.20% 795ms 18.39% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 330ms 7.63% 33.83% 747ms 17.28% __GI___exp 31ms 0.72% 34.55% 741ms 17.14% AbstractCardiacTissue::UpdateCaches (inline) 281ms 6.50% 41.05% 670ms 15.49% CellLuoRudy1991FromCellML::GetIIonic 4ms 0.093% 41.14% 433ms 10.01% MatMult 10ms 0.23% 41.37% 424ms 9.81% MatMult_SeqAIJ (partial-inline) 409ms 9.46% 50.83% 424ms 9.81% MatMult_SeqAIJ_Inode (inline) 335ms 7.75% 58.58% 396ms 9.16% __ieee754_exp_fma 71ms 1.64% 60.22% 324ms 7.49% BidomainSolver::SetupLinearSystem 2ms 0.046% 60.27% 307ms 7.10% KSP_PCApply (partial-inline) 2ms 0.046% 60.31% 297ms 6.87% KSPConvergedDefault 0 0% 60.31% 180ms 4.16% std::pow (inline) 23ms 0.53% 60.85% 179ms 4.14% __pow 21ms 0.49% 61.33% 156ms 3.61% __ieee754_pow_fma 0 0% 61.33% 130ms 3.01% MatNullSpaceRemove 44ms 1.02% 62.35% 108ms 2.50% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.023% 62.37% 100ms 2.31% VecDuplicate 26ms 0.6% 62.97% 89ms 2.06% MPI_Wtime 0 0% 62.97% 77ms 1.78% VecMDot 3ms 0.069% 63.04% 77ms 1.78% VecMXDot_Private 26ms 0.6% 63.64% 76ms 1.76% TimeStepper::TimeStepper 15ms 0.35% 63.99% 73ms 1.69% PetscLogEventEndDefault 71ms 1.64% 65.63% 71ms 1.64% log_inline (inline) 7ms 0.16% 65.80% 64ms 1.48% VecCopy 63ms 1.46% 67.25% 63ms 1.46% [libchaste_heart.so] 2ms 0.046% 67.30% 63ms 1.46% __GI___clock_gettime 10ms 0.23% 67.53% 62ms 1.43% PetscLogEventBeginDefault 59ms 1.36% 68.89% 62ms 1.43% VecMDot_Seq 61ms 1.41% 70.31% 61ms 1.41% [[vdso]] 58ms 1.34% 71.65% 60ms 1.39% exp_inline (inline) 13ms 0.3% 71.95% 59ms 1.36% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 71.95% 59ms 1.36% AbstractBidomainSolver::FinaliseLinearSystem 59ms 1.36% 73.31% 59ms 1.36% ddot_ 10ms 0.23% 73.54% 57ms 1.32% AbstractCardiacCell::SetVoltage (partial-inline) 1ms 0.023% 73.57% 55ms 1.27% VecDestroy 1ms 0.023% 73.59% 53ms 1.23% VecMAXPY 0 0% 73.59% 53ms 1.23% VecNorm 1ms 0.023% 73.61% 50ms 1.16% VecDuplicate_MPI 2ms 0.046% 73.66% 49ms 1.13% VecDuplicate_Seq 48ms 1.11% 74.77% 48ms 1.11% __memcpy_avx_unaligned_erms 47ms 1.09% 75.86% 47ms 1.09% TimeStepper::CalculateNextTime 3ms 0.069% 75.93% 47ms 1.09% VecAXPY 34ms 0.79% 76.71% 46ms 1.06% top12 (inline) 1ms 0.023% 76.73% 44ms 1.02% VecNorm_Seq 43ms 0.99% 77.73% 43ms 0.99% __ieee754_log_fma 30ms 0.69% 78.42% 42ms 0.97% AbstractOneStepIvpOdeSolver::Solve 31ms 0.72% 79.14% 40ms 0.93% AbstractParameterisedSystem::GetAnyVariable 34ms 0.79% 79.93% 40ms 0.93% AbstractParameterisedSystem::SetAnyVariable 0 0% 79.93% 39ms 0.9% CxxTest::RealWorldDescription::setUp 0 0% 79.93% 39ms 0.9% PetscInitialize 0 0% 79.93% 39ms 0.9% PetscMemcpy (inline) 0 0% 79.93% 39ms 0.9% PetscSetup::setUpWorld 0 0% 79.93% 39ms 0.9% PetscSetupUtils::CommonSetup 0 0% 79.93% 39ms 0.9% PetscSetupUtils::InitialisePetsc 2ms 0.046% 79.97% 39ms 0.9% VecCreate 1ms 0.023% 80.00% 39ms 0.9% VecDot 11ms 0.25% 80.25% 38ms 0.88% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 80.25% 38ms 0.88% PMPI_Init_thread 0 0% 80.25% 38ms 0.88% ompi_mpi_init 36ms 0.83% 81.08% 36ms 0.83% DistributedVector::Iterator::operator!= 10ms 0.23% 81.31% 36ms 0.83% PetscMallocA 30ms 0.69% 82.01% 34ms 0.79% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 33ms 0.76% 82.77% 33ms 0.76% asuint64 (inline) 0 0% 82.77% 32ms 0.74% VecDot_Seq 0 0% 82.77% 32ms 0.74% VecXDot_Seq_Private.constprop.0 1ms 0.023% 82.79% 30ms 0.69% 28ms 0.65% 83.44% 28ms 0.65% VecMAXPY_Seq 4ms 0.093% 83.53% 27ms 0.62% PetscHeaderDestroy_Private 0 0% 83.53% 27ms 0.62% VecCopy_Seq (partial-inline) 2ms 0.046% 83.58% 27ms 0.62% VecCreate_MPI_Private 4ms 0.093% 83.67% 27ms 0.62% VecSetType 1ms 0.023% 83.70% 26ms 0.6% PetscMallocAlign 25ms 0.58% 84.27% 25ms 0.58% DistributedVector::Stripe::operator[] (inline) 0 0% 84.27% 25ms 0.58% VecAXPY_Seq 0 0% 84.27% 25ms 0.58% VecNorm_MPI 0 0% 84.27% 25ms 0.58% VecNorm_MPI_Default.constprop.0 25ms 0.58% 84.85% 25ms 0.58% daxpy_ 24ms 0.56% 85.41% 24ms 0.56% DistributedVector::End 0 0% 85.41% 24ms 0.56% orte_init 6ms 0.14% 85.55% 23ms 0.53% AbstractCardiacCell::GetVoltage (inline) 15ms 0.35% 85.89% 23ms 0.53% TimeStepper::AdvanceOneTimeStep 22ms 0.51% 86.40% 22ms 0.51% ReplicatableVector::operator[] 1ms 0.023% 86.42% 22ms 0.51% __GI___libc_malloc