File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3683ms, 86.62% of 4252ms total Dropped 509 nodes (cum <= 21.26ms) flat flat% sum% cum cum% 0 0% 0% 4242ms 99.76% __libc_start_call_main 0 0% 0% 4242ms 99.76% __libc_start_main_impl 0 0% 0% 4242ms 99.76% _start 0 0% 0% 4239ms 99.69% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4239ms 99.69% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4239ms 99.69% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4239ms 99.69% main 0 0% 0% 4196ms 98.68% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4196ms 98.68% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4196ms 98.68% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4187ms 98.47% AbstractCardiacProblem::Solve 0 0% 0.024% 4172ms 98.12% AbstractDynamicLinearPdeSolver::Solve 9ms 0.21% 0.24% 2240ms 52.68% AbstractCardiacTissue::SolveCellSystems 0 0% 0.24% 1563ms 36.76% LinearSystem::Solve 0 0% 0.24% 1501ms 35.30% KSPSolve 5ms 0.12% 0.35% 1501ms 35.30% KSPSolve_Private 4ms 0.094% 0.45% 1456ms 34.24% KSPSolve_SYMMLQ 25ms 0.59% 1.03% 1255ms 29.52% AbstractCardiacCell::ComputeExceptVoltage 24ms 0.56% 1.60% 1114ms 26.20% AbstractOneStepIvpOdeSolver::InternalSolve 61ms 1.43% 3.03% 943ms 22.18% EulerIvpOdeSolver::CalculateNextYValue 3ms 0.071% 3.10% 878ms 20.65% PCApply 0 0% 3.10% 871ms 20.48% PCApply_BJacobi_Singleblock 231ms 5.43% 8.54% 867ms 20.39% CellLuoRudy1991FromCellML::EvaluateYDerivatives 30ms 0.71% 9.24% 805ms 18.93% AbstractCardiacTissue::UpdateCaches (inline) 369ms 8.68% 17.92% 776ms 18.25% __GI___exp 1ms 0.024% 17.94% 755ms 17.76% KSPSolve_PREONLY (partial-inline) 258ms 6.07% 24.01% 742ms 17.45% CellLuoRudy1991FromCellML::GetIIonic 3ms 0.071% 24.08% 704ms 16.56% MatSolve 0 0% 24.08% 704ms 16.56% PCApply_ICC 691ms 16.25% 40.33% 694ms 16.32% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 40.33% 629ms 14.79% KSP_PCApply.lto_priv.18 1ms 0.024% 40.36% 465ms 10.94% MatMult 15ms 0.35% 40.71% 459ms 10.79% MatMult_SeqAIJ (partial-inline) 440ms 10.35% 51.06% 457ms 10.75% MatMult_SeqAIJ_Inode (inline) 330ms 7.76% 58.82% 386ms 9.08% __ieee754_exp_fma 1ms 0.024% 58.84% 332ms 7.81% KSPConvergedDefault 0 0% 58.84% 328ms 7.71% KSP_PCApply (partial-inline) 57ms 1.34% 60.18% 311ms 7.31% BidomainSolver::SetupLinearSystem 2ms 0.047% 60.23% 266ms 6.26% std::pow (inline) 21ms 0.49% 60.72% 264ms 6.21% __pow 17ms 0.4% 61.12% 243ms 5.71% __ieee754_pow_fma 134ms 3.15% 64.28% 134ms 3.15% log_inline (inline) 2ms 0.047% 64.32% 122ms 2.87% MatNullSpaceRemove 57ms 1.34% 65.66% 107ms 2.52% CellLuoRudy1991FromCellML::VerifyStateVariables 20ms 0.47% 66.13% 93ms 2.19% MPI_Wtime 85ms 2.00% 68.13% 87ms 2.05% exp_inline (inline) 1ms 0.024% 68.16% 77ms 1.81% VecDuplicate 77ms 1.81% 69.97% 77ms 1.81% ddot_ 0 0% 69.97% 76ms 1.79% VecMDot 3ms 0.071% 70.04% 76ms 1.79% VecMXDot_Private 1ms 0.024% 70.06% 72ms 1.69% __GI___clock_gettime 71ms 1.67% 71.73% 71ms 1.67% [[vdso]] 11ms 0.26% 71.99% 68ms 1.60% PetscLogEventEndDefault 0 0% 71.99% 65ms 1.53% VecDot 28ms 0.66% 72.65% 59ms 1.39% TimeStepper::TimeStepper 7ms 0.16% 72.81% 55ms 1.29% VecCopy 0 0% 72.81% 53ms 1.25% VecNorm 53ms 1.25% 74.06% 53ms 1.25% [libchaste_heart.so] 10ms 0.24% 74.29% 52ms 1.22% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 74.29% 52ms 1.22% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 74.29% 51ms 1.20% VecDot_Seq 47ms 1.11% 75.40% 51ms 1.20% VecMDot_Seq 1ms 0.024% 75.42% 51ms 1.20% VecXDot_Seq_Private.constprop.0 0 0% 75.42% 48ms 1.13% VecNorm_Seq 5ms 0.12% 75.54% 47ms 1.11% PetscLogEventBeginDefault 13ms 0.31% 75.85% 45ms 1.06% AbstractCardiacCell::SetVoltage (partial-inline) 45ms 1.06% 76.90% 45ms 1.06% __memcpy_avx_unaligned_erms 2ms 0.047% 76.95% 44ms 1.03% VecMAXPY 42ms 0.99% 77.94% 43ms 1.01% __ieee754_log_fma 2ms 0.047% 77.99% 40ms 0.94% VecDestroy 0 0% 77.99% 40ms 0.94% VecDuplicate_MPI 0 0% 77.99% 40ms 0.94% VecNorm_MPI 3ms 0.071% 78.06% 40ms 0.94% VecNorm_MPI_Default.constprop.0 32ms 0.75% 78.81% 40ms 0.94% top12 (inline) 0 0% 78.81% 39ms 0.92% CxxTest::RealWorldDescription::setUp 0 0% 78.81% 39ms 0.92% PMPI_Init_thread 0 0% 78.81% 39ms 0.92% PetscInitialize 0 0% 78.81% 39ms 0.92% PetscSetup::setUpWorld 0 0% 78.81% 39ms 0.92% PetscSetupUtils::CommonSetup 0 0% 78.81% 39ms 0.92% PetscSetupUtils::InitialisePetsc 39ms 0.92% 79.73% 39ms 0.92% TimeStepper::CalculateNextTime 3ms 0.071% 79.80% 39ms 0.92% VecAXPY 0 0% 79.80% 39ms 0.92% ompi_mpi_init 2ms 0.047% 79.84% 36ms 0.85% 1ms 0.024% 79.87% 36ms 0.85% VecDuplicate_Seq 6ms 0.14% 80.01% 35ms 0.82% PetscMallocA 0 0% 80.01% 32ms 0.75% PetscMemcpy (inline) 18ms 0.42% 80.43% 32ms 0.75% TimeStepper::AdvanceOneTimeStep 32ms 0.75% 81.19% 32ms 0.75% asuint64 (inline) 30ms 0.71% 81.89% 30ms 0.71% DistributedVector::Iterator::operator!= 4ms 0.094% 81.98% 29ms 0.68% PetscMallocAlign 18ms 0.42% 82.41% 28ms 0.66% AbstractOneStepIvpOdeSolver::Solve 22ms 0.52% 82.93% 28ms 0.66% AbstractParameterisedSystem::GetAnyVariable 22ms 0.52% 83.44% 27ms 0.63% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 23ms 0.54% 83.98% 27ms 0.63% AbstractParameterisedSystem::SetAnyVariable 0 0% 83.98% 27ms 0.63% VecCopy_Seq (partial-inline) 2ms 0.047% 84.03% 26ms 0.61% VecCreate 24ms 0.56% 84.60% 26ms 0.61% VecMAXPY_Seq 2ms 0.047% 84.64% 25ms 0.59% VecCreate_MPI_Private 0 0% 84.64% 25ms 0.59% std::vector::_M_assign_aux (inline) 0 0% 84.64% 25ms 0.59% std::vector::assign (inline) 24ms 0.56% 85.21% 24ms 0.56% [libm.so.6] 0 0% 85.21% 24ms 0.56% orte_init 8ms 0.19% 85.40% 23ms 0.54% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 23ms 0.54% 85.94% 23ms 0.54% DistributedVector::End 23ms 0.54% 86.48% 23ms 0.54% DistributedVector::Stripe::operator[] (inline) 5ms 0.12% 86.59% 22ms 0.52% AbstractCardiacCell::GetVoltage (inline) 0 0% 86.59% 22ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.024% 86.62% 22ms 0.52% VecAXPY_Seq