File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3603ms, 86.44% of 4168ms total Dropped 449 nodes (cum <= 20.84ms) flat flat% sum% cum cum% 0 0% 0% 4160ms 99.81% __libc_start_call_main 0 0% 0% 4160ms 99.81% __libc_start_main_impl 0 0% 0% 4160ms 99.81% _start 0 0% 0% 4157ms 99.74% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4157ms 99.74% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4157ms 99.74% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4157ms 99.74% main 0 0% 0% 4118ms 98.80% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4118ms 98.80% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4118ms 98.80% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4110ms 98.61% AbstractCardiacProblem::Solve 2ms 0.048% 0.048% 4103ms 98.44% AbstractDynamicLinearPdeSolver::Solve 8ms 0.19% 0.24% 2096ms 50.29% AbstractCardiacTissue::SolveCellSystems 1ms 0.024% 0.26% 1569ms 37.64% LinearSystem::Solve 1ms 0.024% 0.29% 1489ms 35.72% KSPSolve 9ms 0.22% 0.5% 1488ms 35.70% KSPSolve_Private 0 0% 0.5% 1436ms 34.45% KSPSolve_SYMMLQ 26ms 0.62% 1.13% 1195ms 28.67% AbstractCardiacCell::ComputeExceptVoltage 18ms 0.43% 1.56% 1037ms 24.88% AbstractOneStepIvpOdeSolver::InternalSolve 3ms 0.072% 1.63% 927ms 22.24% PCApply 0 0% 1.63% 916ms 21.98% PCApply_BJacobi_Singleblock 61ms 1.46% 3.10% 901ms 21.62% EulerIvpOdeSolver::CalculateNextYValue 231ms 5.54% 8.64% 829ms 19.89% CellLuoRudy1991FromCellML::EvaluateYDerivatives 359ms 8.61% 17.25% 763ms 18.31% __GI___exp 0 0% 17.25% 759ms 18.21% KSPSolve_PREONLY (partial-inline) 4ms 0.096% 17.35% 723ms 17.35% MatSolve 0 0% 17.35% 723ms 17.35% PCApply_ICC 17ms 0.41% 17.75% 722ms 17.32% AbstractCardiacTissue::UpdateCaches (inline) 706ms 16.94% 34.69% 714ms 17.13% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 0 0% 34.69% 711ms 17.06% KSP_PCApply.lto_priv.18 232ms 5.57% 40.26% 688ms 16.51% CellLuoRudy1991FromCellML::GetIIonic 4ms 0.096% 40.36% 501ms 12.02% MatMult 1ms 0.024% 40.38% 489ms 11.73% MatMult_SeqAIJ 486ms 11.66% 52.04% 489ms 11.73% MatMult_SeqAIJ_Inode (inline) 362ms 8.69% 60.72% 393ms 9.43% __ieee754_exp_fma 53ms 1.27% 62.00% 366ms 8.78% BidomainSolver::SetupLinearSystem 2ms 0.048% 62.04% 282ms 6.77% KSPConvergedDefault 0 0% 62.04% 270ms 6.48% KSP_PCApply (partial-inline) 6ms 0.14% 62.19% 234ms 5.61% std::pow (inline) 21ms 0.5% 62.69% 228ms 5.47% __pow 24ms 0.58% 63.27% 207ms 4.97% __ieee754_pow_fma 62ms 1.49% 64.76% 144ms 3.45% CellLuoRudy1991FromCellML::VerifyStateVariables 0 0% 64.76% 118ms 2.83% VecDuplicate 107ms 2.57% 67.32% 107ms 2.57% log_inline (inline) 0 0% 67.32% 106ms 2.54% MatNullSpaceRemove 9ms 0.22% 67.54% 79ms 1.90% VecCopy 15ms 0.36% 67.90% 76ms 1.82% MPI_Wtime 0 0% 67.90% 75ms 1.80% VecMDot 7ms 0.17% 68.07% 75ms 1.80% VecMXDot_Private 15ms 0.36% 68.43% 66ms 1.58% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 68.43% 66ms 1.58% AbstractBidomainSolver::FinaliseLinearSystem 65ms 1.56% 69.99% 66ms 1.58% exp_inline (inline) 6ms 0.14% 70.13% 65ms 1.56% VecDuplicate_MPI 15ms 0.36% 70.49% 62ms 1.49% PetscLogEventBeginDefault 2ms 0.048% 70.54% 60ms 1.44% __GI___clock_gettime 60ms 1.44% 71.98% 60ms 1.44% ddot_ 58ms 1.39% 73.37% 58ms 1.39% [[vdso]] 1ms 0.024% 73.39% 57ms 1.37% VecNorm 9ms 0.22% 73.61% 53ms 1.27% PetscLogEventEndDefault 2ms 0.048% 73.66% 53ms 1.27% VecDuplicate_Seq 53ms 1.27% 74.93% 53ms 1.27% VecMDot_Seq 24ms 0.58% 75.50% 51ms 1.22% TimeStepper::TimeStepper 2ms 0.048% 75.55% 51ms 1.22% VecDot 0 0% 75.55% 48ms 1.15% PetscMemcpy (inline) 0 0% 75.55% 48ms 1.15% VecNorm_Seq 48ms 1.15% 76.70% 48ms 1.15% __memcpy_avx_unaligned_erms 1ms 0.024% 76.73% 45ms 1.08% VecCreate 45ms 1.08% 77.81% 45ms 1.08% [libchaste_heart.so] 0 0% 77.81% 44ms 1.06% VecDot_Seq 0 0% 77.81% 44ms 1.06% VecXDot_Seq_Private.constprop.0 25ms 0.6% 78.41% 43ms 1.03% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 43ms 1.03% 79.44% 43ms 1.03% DistributedVector::Iterator::operator!= 0 0% 79.44% 41ms 0.98% VecNorm_MPI 2ms 0.048% 79.49% 41ms 0.98% VecNorm_MPI_Default.constprop.0 4ms 0.096% 79.58% 39ms 0.94% VecCreate_MPI_Private 23ms 0.55% 80.13% 39ms 0.94% top12 (inline) 5ms 0.12% 80.25% 37ms 0.89% PetscMallocA 37ms 0.89% 81.14% 37ms 0.89% std::isinf (inline) 35ms 0.84% 81.98% 36ms 0.86% __ieee754_log_fma 0 0% 81.98% 35ms 0.84% CxxTest::RealWorldDescription::setUp 0 0% 81.98% 35ms 0.84% PetscInitialize 0 0% 81.98% 35ms 0.84% PetscSetup::setUpWorld 0 0% 81.98% 35ms 0.84% PetscSetupUtils::CommonSetup 0 0% 81.98% 35ms 0.84% PetscSetupUtils::InitialisePetsc 1ms 0.024% 82.01% 35ms 0.84% VecCopy_Seq (partial-inline) 0 0% 82.01% 34ms 0.82% PMPI_Init_thread 0 0% 82.01% 34ms 0.82% ompi_mpi_init 25ms 0.6% 82.61% 32ms 0.77% AbstractOneStepIvpOdeSolver::Solve 1ms 0.024% 82.63% 32ms 0.77% PetscMallocAlign (partial-inline) 32ms 0.77% 83.40% 32ms 0.77% TimeStepper::CalculateNextTime 2ms 0.048% 83.45% 32ms 0.77% VecDestroy 5ms 0.12% 83.57% 31ms 0.74% VecMAXPY 0 0% 83.57% 30ms 0.72% KSP_RemoveNullSpace (inline) 7ms 0.17% 83.73% 30ms 0.72% VecAXPY 30ms 0.72% 84.45% 30ms 0.72% dasum_ 2ms 0.048% 84.50% 29ms 0.7% 24ms 0.58% 85.08% 28ms 0.67% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 85.08% 27ms 0.65% VecSetType 3ms 0.072% 85.15% 25ms 0.6% PetscHeaderCreate_Private 25ms 0.6% 85.75% 25ms 0.6% __memset_avx2_unaligned_erms 9ms 0.22% 85.96% 25ms 0.6% std::__cxx11::basic_string::basic_string 4ms 0.096% 86.06% 24ms 0.58% AbstractCardiacCell::SetVoltage (partial-inline) 0 0% 86.06% 24ms 0.58% PetscMemzero (inline) 0 0% 86.06% 24ms 0.58% orte_init 3ms 0.072% 86.13% 22ms 0.53% PetscOptionsFindPair 13ms 0.31% 86.44% 21ms 0.5% AbstractCardiacCell::GetVoltage (partial-inline)