File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 110670ms, 91.87% of 120467ms total Dropped 1137 nodes (cum <= 602.34ms) flat flat% sum% cum cum% 0 0% 0% 120449ms 100% __libc_start_call_main 0 0% 0% 120449ms 100% __libc_start_main_impl 0 0% 0% 120449ms 100% _start 0 0% 0% 120446ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 120446ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 120446ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 120446ms 100% main 0 0% 0% 120409ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 120409ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 120408ms 100% AbstractConvergenceTester::Converge 0 0% 0% 120408ms 100% CxxTest::RealTestDescription::run 0 0% 0% 120408ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 120408ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 8ms 0.0066% 0.0066% 119146ms 98.90% AbstractCardiacProblem::Solve 8ms 0.0066% 0.013% 118331ms 98.23% AbstractDynamicLinearPdeSolver::Solve 7ms 0.0058% 0.019% 66773ms 55.43% LinearSystem::Solve 0 0% 0.019% 66281ms 55.02% KSPSolve 5ms 0.0042% 0.023% 66281ms 55.02% KSPSolve_Private 8ms 0.0066% 0.03% 65857ms 54.67% KSPSolve_SYMMLQ 208ms 0.17% 0.2% 42622ms 35.38% AbstractCardiacTissue::SolveCellSystems 4ms 0.0033% 0.21% 37207ms 30.89% PCApply 6ms 0.005% 0.21% 37200ms 30.88% PCApply_BJacobi_Singleblock 1ms 0.00083% 0.21% 34485ms 28.63% KSPSolve_PREONLY (partial-inline) 2ms 0.0017% 0.21% 33396ms 27.72% PCApply_ICC 9ms 0.0075% 0.22% 33394ms 27.72% MatSolve 32873ms 27.29% 27.51% 33385ms 27.71% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1422ms 1.18% 28.69% 32826ms 27.25% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 28.69% 32124ms 26.67% KSP_PCApply.lto_priv.18 6924ms 5.75% 34.44% 28356ms 23.54% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.0058% 34.44% 22468ms 18.65% MatMult 234ms 0.19% 34.64% 22461ms 18.64% MatMult_SeqAIJ (partial-inline) 21949ms 18.22% 52.86% 22459ms 18.64% MatMult_SeqAIJ_Inode (inline) 1938ms 1.61% 54.47% 14715ms 12.21% CardiacNewtonSolver::Solve 360ms 0.3% 54.77% 8989ms 7.46% AbstractCardiacTissue::UpdateCaches (inline) 4292ms 3.56% 58.33% 8515ms 7.07% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2006ms 1.67% 59.99% 8411ms 6.98% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1221ms 1.01% 61.01% 7930ms 6.58% BidomainSolver::SetupLinearSystem 1218ms 1.01% 62.02% 7511ms 6.23% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 4ms 0.0033% 62.02% 7016ms 5.82% KSP_PCApply (partial-inline) 2ms 0.0017% 62.02% 6436ms 5.34% KSPConvergedDefault 6044ms 5.02% 67.04% 6044ms 5.02% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3932ms 3.26% 70.30% 3965ms 3.29% __ieee754_log_fma 0 0% 70.30% 3840ms 3.19% boost::numeric::ublas::norm_inf (inline) 2584ms 2.14% 72.45% 3840ms 3.19% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.45% 3840ms 3.19% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.45% 3840ms 3.19% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 3427ms 2.84% 75.29% 3427ms 2.84% __memcpy_avx_unaligned_erms 0 0% 75.29% 3378ms 2.80% PetscMemcpy (inline) 8ms 0.0066% 75.30% 3337ms 2.77% MatNullSpaceRemove 20ms 0.017% 75.32% 3200ms 2.66% std::pow (inline) 395ms 0.33% 75.65% 3158ms 2.62% __pow 18ms 0.015% 75.66% 2904ms 2.41% VecCopy 3ms 0.0025% 75.66% 2882ms 2.39% VecCopy_Seq (partial-inline) 1738ms 1.44% 77.11% 2861ms 2.37% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 2766ms 2.30% 79.40% 2766ms 2.30% ddot_ 365ms 0.3% 79.70% 2753ms 2.29% __ieee754_pow_fma 8ms 0.0066% 79.71% 2593ms 2.15% VecAXPY 2ms 0.0017% 79.71% 2585ms 2.15% VecAXPY_Seq 2571ms 2.13% 81.85% 2571ms 2.13% daxpy_ 2ms 0.0017% 81.85% 2217ms 1.84% VecDot 1ms 0.00083% 81.85% 2215ms 1.84% VecDot_Seq 1ms 0.00083% 81.85% 2214ms 1.84% VecXDot_Seq_Private.constprop.0 4ms 0.0033% 81.85% 2072ms 1.72% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00083% 81.85% 1891ms 1.57% VecMDot 4ms 0.0033% 81.86% 1890ms 1.57% VecMXDot_Private 1883ms 1.56% 83.42% 1884ms 1.56% VecMDot_Seq 30ms 0.025% 83.45% 1753ms 1.46% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1586ms 1.32% 84.76% 1645ms 1.37% exp_inline (inline) 2ms 0.0017% 84.76% 1438ms 1.19% VecMAXPY 1432ms 1.19% 85.95% 1436ms 1.19% VecMAXPY_Seq 0 0% 85.95% 1419ms 1.18% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1192ms 0.99% 86.94% 1192ms 0.99% __memset_avx2_unaligned_erms 0 0% 86.94% 1182ms 0.98% PetscMemzero (inline) 0 0% 86.94% 1158ms 0.96% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.94% 1158ms 0.96% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.94% 1158ms 0.96% boost_numeric_ublas_abs (inline) 1158ms 0.96% 87.90% 1158ms 0.96% std::abs (inline) 1100ms 0.91% 88.82% 1100ms 0.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 88.82% 1097ms 0.91% CuboidMeshConstructor::Construct 0 0% 88.82% 1096ms 0.91% AbstractTetrahedralMesh::ConstructRegularSlabMesh 3ms 0.0025% 88.82% 1096ms 0.91% DistributedTetrahedralMesh::ConstructCuboid 3ms 0.0025% 88.82% 1073ms 0.89% boost::numeric::ublas::matrix_assign (inline) 199ms 0.17% 88.99% 1066ms 0.88% boost::numeric::ublas::indexing_matrix_assign 796ms 0.66% 89.65% 1042ms 0.86% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 0 0% 89.65% 1011ms 0.84% KSP_RemoveNullSpace (inline) 1ms 0.00083% 89.65% 994ms 0.83% Element::Element 2ms 0.0017% 89.65% 987ms 0.82% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.65% 981ms 0.81% VecDuplicate 6ms 0.005% 89.66% 948ms 0.79% VecScale 1ms 0.00083% 89.66% 942ms 0.78% VecScale_Seq 939ms 0.78% 90.44% 939ms 0.78% dscal_ 5ms 0.0042% 90.44% 925ms 0.77% AbstractTetrahedralElement::AbstractTetrahedralElement 7ms 0.0058% 90.45% 870ms 0.72% BidomainAssembler::ComputeMatrixTerm 839ms 0.7% 91.14% 839ms 0.7% [libchaste_heart.so] 11ms 0.0091% 91.15% 818ms 0.68% PetscMallocA 6ms 0.005% 91.16% 813ms 0.67% boost::numeric::ublas::c_matrix::c_matrix (inline) 6ms 0.005% 91.16% 807ms 0.67% PetscMallocAlign (partial-inline) 1ms 0.00083% 91.16% 789ms 0.65% VecNorm 0 0% 91.16% 774ms 0.64% VecNorm_Seq 0 0% 91.16% 732ms 0.61% BidomainProblem::WriteOneStep 694ms 0.58% 91.74% 694ms 0.58% log_inline (inline) 1ms 0.00083% 91.74% 686ms 0.57% AbstractBidomainSolver::FinaliseLinearSystem 150ms 0.12% 91.86% 685ms 0.57% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 91.86% 653ms 0.54% AbstractFeAssemblerInterface::Assemble (inline) 3ms 0.0025% 91.87% 634ms 0.53% VecDuplicate_Seq