File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 2832ms, 87.22% of 3247ms total Dropped 442 nodes (cum <= 16.23ms) flat flat% sum% cum cum% 0 0% 0% 3240ms 99.78% __libc_start_call_main 0 0% 0% 3240ms 99.78% __libc_start_main_impl 0 0% 0% 3240ms 99.78% _start 0 0% 0% 3237ms 99.69% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 3237ms 99.69% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 3237ms 99.69% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 3237ms 99.69% main 0 0% 0% 3199ms 98.52% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 3199ms 98.52% CxxTest::TestRunner::runTest (inline) 0 0% 0% 3199ms 98.52% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 3192ms 98.31% AbstractCardiacProblem::Solve 0 0% 0% 3179ms 97.91% AbstractDynamicLinearPdeSolver::Solve 1ms 0.031% 0.031% 1487ms 45.80% LinearSystem::Solve 0 0% 0.031% 1444ms 44.47% KSPSolve 3ms 0.092% 0.12% 1444ms 44.47% KSPSolve_Private 11ms 0.34% 0.46% 1430ms 44.04% AbstractCardiacTissue::SolveCellSystems 0 0% 0.46% 1396ms 42.99% KSPSolve_SYMMLQ 8ms 0.25% 0.71% 931ms 28.67% PCApply 2ms 0.062% 0.77% 919ms 28.30% PCApply_BJacobi_Singleblock 0 0% 0.77% 794ms 24.45% KSPSolve_PREONLY (partial-inline) 27ms 0.83% 1.60% 793ms 24.42% AbstractCardiacCell::ComputeExceptVoltage 3ms 0.092% 1.69% 752ms 23.16% MatSolve 0 0% 1.69% 752ms 23.16% PCApply_ICC 741ms 22.82% 24.51% 744ms 22.91% MatSolve_SeqSBAIJ_1_NaturalOrdering 0 0% 24.51% 665ms 20.48% KSP_PCApply.lto_priv.18 18ms 0.55% 25.07% 659ms 20.30% AbstractOneStepIvpOdeSolver::InternalSolve 37ms 1.14% 26.21% 543ms 16.72% EulerIvpOdeSolver::CalculateNextYValue 15ms 0.46% 26.67% 532ms 16.38% AbstractCardiacTissue::UpdateCaches (inline) 138ms 4.25% 30.92% 502ms 15.46% CellLuoRudy1991FromCellML::EvaluateYDerivatives 164ms 5.05% 35.97% 483ms 14.88% CellLuoRudy1991FromCellML::GetIIonic 187ms 5.76% 41.73% 458ms 14.11% __GI___exp 0 0% 41.73% 372ms 11.46% MatMult 15ms 0.46% 42.19% 367ms 11.30% MatMult_SeqAIJ (partial-inline) 350ms 10.78% 52.97% 367ms 11.30% MatMult_SeqAIJ_Inode (inline) 1ms 0.031% 53.00% 334ms 10.29% KSPConvergedDefault 0 0% 53.00% 318ms 9.79% KSP_PCApply (partial-inline) 208ms 6.41% 59.41% 251ms 7.73% __ieee754_exp_fma 40ms 1.23% 60.64% 230ms 7.08% BidomainSolver::SetupLinearSystem 16ms 0.49% 61.13% 172ms 5.30% __pow 0 0% 61.13% 172ms 5.30% std::pow (inline) 15ms 0.46% 61.60% 156ms 4.80% __ieee754_pow_fma 2ms 0.062% 61.66% 105ms 3.23% MatNullSpaceRemove 1ms 0.031% 61.69% 100ms 3.08% VecDuplicate 81ms 2.49% 64.18% 81ms 2.49% log_inline (inline) 17ms 0.52% 64.71% 77ms 2.37% MPI_Wtime 71ms 2.19% 66.89% 71ms 2.19% ddot_ 0 0% 66.89% 62ms 1.91% VecMDot 2ms 0.062% 66.95% 62ms 1.91% VecMXDot_Private 60ms 1.85% 68.80% 60ms 1.85% [[vdso]] 0 0% 68.80% 60ms 1.85% __GI___clock_gettime 36ms 1.11% 69.91% 58ms 1.79% CellLuoRudy1991FromCellML::VerifyStateVariables 8ms 0.25% 70.16% 57ms 1.76% PetscLogEventEndDefault 3ms 0.092% 70.25% 56ms 1.72% VecDuplicate_MPI 9ms 0.28% 70.53% 51ms 1.57% PetscLogEventBeginDefault 6ms 0.18% 70.71% 50ms 1.54% VecCopy 0 0% 70.71% 50ms 1.54% VecNorm 13ms 0.4% 71.11% 49ms 1.51% AbstractCardiacCell::SetVoltage (partial-inline) 49ms 1.51% 72.62% 49ms 1.51% [libchaste_heart.so] 48ms 1.48% 74.10% 49ms 1.51% exp_inline (inline) 2ms 0.062% 74.16% 47ms 1.45% PetscMallocA 3ms 0.092% 74.25% 46ms 1.42% VecDot 1ms 0.031% 74.28% 46ms 1.42% VecNorm_Seq 4ms 0.12% 74.41% 45ms 1.39% PetscMallocAlign (partial-inline) 1ms 0.031% 74.44% 45ms 1.39% VecCreate 45ms 1.39% 75.82% 45ms 1.39% VecMDot_Seq 0 0% 75.82% 43ms 1.32% VecDuplicate_Seq 19ms 0.59% 76.41% 41ms 1.26% TimeStepper::TimeStepper 2ms 0.062% 76.47% 41ms 1.26% VecMAXPY 0 0% 76.47% 39ms 1.20% VecDot_Seq 0 0% 76.47% 39ms 1.20% VecXDot_Seq_Private.constprop.0 37ms 1.14% 77.61% 37ms 1.14% __memcpy_avx512_unaligned_erms 0 0% 77.61% 35ms 1.08% CxxTest::RealWorldDescription::setUp 0 0% 77.61% 35ms 1.08% PMPI_Init_thread 0 0% 77.61% 35ms 1.08% PetscInitialize 0 0% 77.61% 35ms 1.08% PetscSetup::setUpWorld 0 0% 77.61% 35ms 1.08% PetscSetupUtils::CommonSetup 0 0% 77.61% 35ms 1.08% PetscSetupUtils::InitialisePetsc 0 0% 77.61% 35ms 1.08% ompi_mpi_init 33ms 1.02% 78.63% 35ms 1.08% top12 (inline) 31ms 0.95% 79.58% 32ms 0.99% AbstractParameterisedSystem::SetAnyVariable 3ms 0.092% 79.67% 31ms 0.95% VecCreate_MPI_Private 0 0% 79.67% 29ms 0.89% 1ms 0.031% 79.70% 29ms 0.89% VecDestroy 20ms 0.62% 80.32% 28ms 0.86% AbstractOneStepIvpOdeSolver::Solve 0 0% 80.32% 28ms 0.86% PetscMemcpy (inline) 9ms 0.28% 80.60% 27ms 0.83% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 80.60% 27ms 0.83% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 80.60% 27ms 0.83% VecNorm_MPI 0 0% 80.60% 27ms 0.83% VecNorm_MPI_Default.constprop.0 26ms 0.8% 81.40% 26ms 0.8% TimeStepper::CalculateNextTime 2ms 0.062% 81.46% 24ms 0.74% __posix_memalign 0 0% 81.46% 23ms 0.71% PetscMemzero (inline) 23ms 0.71% 82.17% 23ms 0.71% __memset_avx512_unaligned_erms 0 0% 82.17% 23ms 0.71% orte_init 1ms 0.031% 82.20% 22ms 0.68% VecCopy_Seq (partial-inline) 22ms 0.68% 82.88% 22ms 0.68% [libm.so.6] 4ms 0.12% 83.00% 22ms 0.68% __GI___libc_malloc 22ms 0.68% 83.68% 22ms 0.68% asuint64 (inline) 2ms 0.062% 83.74% 21ms 0.65% PetscHeaderCreate_Private 20ms 0.62% 84.35% 21ms 0.65% VecMAXPY_Seq 0 0% 84.35% 21ms 0.65% VecScale 20ms 0.62% 84.97% 20ms 0.62% __ieee754_log_fma 14ms 0.43% 85.40% 19ms 0.59% AbstractParameterisedSystem::GetAnyVariable 14ms 0.43% 85.83% 18ms 0.55% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 3ms 0.092% 85.93% 18ms 0.55% PMPI_Comm_get_attr 0 0% 85.93% 18ms 0.55% VecAXPY 5ms 0.15% 86.08% 17ms 0.52% AbstractCardiacCell::GetVoltage (inline) 8ms 0.25% 86.33% 17ms 0.52% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 0 0% 86.33% 17ms 0.52% AbstractFeVolumeIntegralAssembler::DoAssemble 17ms 0.52% 86.85% 17ms 0.52% RegularStimulus::GetStimulus 0 0% 86.85% 17ms 0.52% VecSetType 12ms 0.37% 87.22% 17ms 0.52% _int_malloc