File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 109475ms, 91.90% of 119126ms total Dropped 1128 nodes (cum <= 595.63ms) flat flat% sum% cum cum% 0 0% 0% 119113ms 100% __libc_start_call_main 0 0% 0% 119113ms 100% __libc_start_main_impl 0 0% 0% 119113ms 100% _start 0 0% 0% 119111ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 119111ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 119111ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 119111ms 100% main 0 0% 0% 119073ms 100% CxxTest::RealTestDescription::run 0 0% 0% 119073ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 119073ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 119073ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 119073ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 0 0% 0% 119072ms 100% AbstractConvergenceTester::Converge 2ms 0.0017% 0.0017% 117818ms 98.90% AbstractCardiacProblem::Solve 9ms 0.0076% 0.0092% 117060ms 98.27% AbstractDynamicLinearPdeSolver::Solve 4ms 0.0034% 0.013% 65373ms 54.88% LinearSystem::Solve 4ms 0.0034% 0.016% 64824ms 54.42% KSPSolve 13ms 0.011% 0.027% 64822ms 54.41% KSPSolve_Private 11ms 0.0092% 0.036% 64408ms 54.07% KSPSolve_SYMMLQ 199ms 0.17% 0.2% 42849ms 35.97% AbstractCardiacTissue::SolveCellSystems 3ms 0.0025% 0.21% 36289ms 30.46% PCApply 2ms 0.0017% 0.21% 36278ms 30.45% PCApply_BJacobi_Singleblock 2ms 0.0017% 0.21% 33868ms 28.43% KSPSolve_PREONLY (partial-inline) 1438ms 1.21% 1.42% 33100ms 27.79% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 2ms 0.0017% 1.42% 32605ms 27.37% PCApply_ICC 4ms 0.0034% 1.42% 32603ms 27.37% MatSolve 32163ms 27.00% 28.42% 32599ms 27.37% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 3ms 0.0025% 28.42% 31333ms 26.30% KSP_PCApply.lto_priv.18 6806ms 5.71% 34.14% 28553ms 23.97% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 7ms 0.0059% 34.14% 22201ms 18.64% MatMult 292ms 0.25% 34.39% 22194ms 18.63% MatMult_SeqAIJ (partial-inline) 21682ms 18.20% 52.59% 22193ms 18.63% MatMult_SeqAIJ_Inode (inline) 1910ms 1.60% 54.19% 14661ms 12.31% CardiacNewtonSolver::Solve 385ms 0.32% 54.51% 8937ms 7.50% AbstractCardiacTissue::UpdateCaches (inline) 4380ms 3.68% 58.19% 8612ms 7.23% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 2069ms 1.74% 59.93% 8372ms 7.03% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1382ms 1.16% 61.09% 7839ms 6.58% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1152ms 0.97% 62.06% 7794ms 6.54% BidomainSolver::SetupLinearSystem 2ms 0.0017% 62.06% 7113ms 5.97% KSP_PCApply (partial-inline) 6ms 0.005% 62.06% 6446ms 5.41% KSPConvergedDefault 6207ms 5.21% 67.27% 6207ms 5.21% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3956ms 3.32% 70.59% 3990ms 3.35% __ieee754_log_fma 0 0% 70.59% 3729ms 3.13% boost::numeric::ublas::norm_inf (inline) 2543ms 2.13% 72.73% 3729ms 3.13% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.73% 3729ms 3.13% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.73% 3729ms 3.13% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 7ms 0.0059% 72.73% 3521ms 2.96% MatNullSpaceRemove 3180ms 2.67% 75.40% 3180ms 2.67% __memcpy_avx_unaligned_erms 0 0% 75.40% 3148ms 2.64% PetscMemcpy (inline) 18ms 0.015% 75.42% 3148ms 2.64% std::pow (inline) 395ms 0.33% 75.75% 3112ms 2.61% __pow 1820ms 1.53% 77.28% 2955ms 2.48% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 22ms 0.018% 77.30% 2740ms 2.30% VecCopy 2737ms 2.30% 79.59% 2737ms 2.30% ddot_ 3ms 0.0025% 79.60% 2717ms 2.28% VecCopy_Seq (partial-inline) 375ms 0.31% 79.91% 2711ms 2.28% __ieee754_pow_fma 13ms 0.011% 79.92% 2385ms 2.00% VecAXPY 8ms 0.0067% 79.93% 2372ms 1.99% VecAXPY_Seq 2344ms 1.97% 81.90% 2344ms 1.97% daxpy_ 3ms 0.0025% 81.90% 2204ms 1.85% VecDot 0 0% 81.90% 2201ms 1.85% VecDot_Seq 1ms 0.00084% 81.90% 2201ms 1.85% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.90% 2059ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00084% 81.90% 2024ms 1.70% VecMDot 10ms 0.0084% 81.91% 2023ms 1.70% VecMXDot_Private 2005ms 1.68% 83.59% 2010ms 1.69% VecMDot_Seq 14ms 0.012% 83.61% 1675ms 1.41% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1540ms 1.29% 84.90% 1602ms 1.34% exp_inline (inline) 7ms 0.0059% 84.90% 1490ms 1.25% VecMAXPY 1478ms 1.24% 86.14% 1483ms 1.24% VecMAXPY_Seq 0 0% 86.14% 1398ms 1.17% AbstractFeAssemblerInterface::AssembleMatrix (inline) 3ms 0.0025% 86.15% 1132ms 0.95% KSP_RemoveNullSpace (inline) 1ms 0.00084% 86.15% 1102ms 0.93% CuboidMeshConstructor::Construct 0 0% 86.15% 1101ms 0.92% AbstractTetrahedralMesh::ConstructRegularSlabMesh 1ms 0.00084% 86.15% 1101ms 0.92% DistributedTetrahedralMesh::ConstructCuboid 0 0% 86.15% 1094ms 0.92% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.15% 1094ms 0.92% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.15% 1094ms 0.92% boost_numeric_ublas_abs (inline) 1094ms 0.92% 87.07% 1094ms 0.92% std::abs (inline) 1090ms 0.91% 87.98% 1090ms 0.91% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 3ms 0.0025% 87.98% 1086ms 0.91% boost::numeric::ublas::matrix_assign (inline) 228ms 0.19% 88.18% 1080ms 0.91% boost::numeric::ublas::indexing_matrix_assign 1062ms 0.89% 89.07% 1062ms 0.89% __memset_avx2_unaligned_erms 0 0% 89.07% 1057ms 0.89% PetscMemzero (inline) 798ms 0.67% 89.74% 1035ms 0.87% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 2ms 0.0017% 89.74% 1028ms 0.86% AbstractTetrahedralElement::CalculateJacobian 1ms 0.00084% 89.74% 1024ms 0.86% Element::Element 1ms 0.00084% 89.74% 964ms 0.81% AbstractTetrahedralElement::AbstractTetrahedralElement 4ms 0.0034% 89.74% 917ms 0.77% VecDuplicate 8ms 0.0067% 89.75% 858ms 0.72% VecScale 5ms 0.0042% 89.76% 850ms 0.71% VecScale_Seq 7ms 0.0059% 89.76% 848ms 0.71% boost::numeric::ublas::c_matrix::c_matrix (inline) 845ms 0.71% 90.47% 845ms 0.71% dscal_ 9ms 0.0076% 90.48% 840ms 0.71% BidomainAssembler::ComputeMatrixTerm 1ms 0.00084% 90.48% 823ms 0.69% VecNorm 1ms 0.00084% 90.48% 812ms 0.68% VecNorm_Seq 809ms 0.68% 91.16% 809ms 0.68% [libchaste_heart.so] 15ms 0.013% 91.17% 755ms 0.63% PetscMallocA 7ms 0.0059% 91.18% 740ms 0.62% PetscMallocAlign (partial-inline) 2ms 0.0017% 91.18% 720ms 0.6% AbstractBidomainSolver::FinaliseLinearSystem 165ms 0.14% 91.32% 713ms 0.6% AbstractBidomainSolver::CheckCompatibilityCondition 2ms 0.0017% 91.32% 711ms 0.6% BidomainProblem::WriteOneStep 690ms 0.58% 91.90% 690ms 0.58% log_inline (inline) 0 0% 91.90% 661ms 0.55% AbstractFeAssemblerInterface::Assemble (inline)