File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3593ms, 86.20% of 4168ms total Dropped 455 nodes (cum <= 20.84ms) flat flat% sum% cum cum% 0 0% 0% 4159ms 99.78% __libc_start_call_main 0 0% 0% 4159ms 99.78% __libc_start_main_impl 0 0% 0% 4159ms 99.78% _start 0 0% 0% 4156ms 99.71% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4156ms 99.71% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4156ms 99.71% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4156ms 99.71% main 0 0% 0% 4119ms 98.82% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4119ms 98.82% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4119ms 98.82% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4114ms 98.70% AbstractCardiacProblem::Solve 0 0% 0.024% 4103ms 98.44% AbstractDynamicLinearPdeSolver::Solve 0 0% 0.024% 2765ms 66.34% LinearSystem::Solve 0 0% 0.024% 2728ms 65.45% KSPSolve 8ms 0.19% 0.22% 2728ms 65.45% KSPSolve_Private 3ms 0.072% 0.29% 2679ms 64.28% KSPSolve_SYMMLQ 3ms 0.072% 0.36% 1957ms 46.95% PCApply 1ms 0.024% 0.38% 1948ms 46.74% PCApply_BJacobi_Singleblock 2ms 0.048% 0.43% 1629ms 39.08% KSPSolve_PREONLY (partial-inline) 1ms 0.024% 0.46% 1555ms 37.31% PCApply_ICC 4ms 0.096% 0.55% 1554ms 37.28% MatSolve 1533ms 36.78% 37.33% 1540ms 36.95% MatSolve_SeqSBAIJ_1_NaturalOrdering 6ms 0.14% 37.48% 1118ms 26.82% AbstractCardiacTissue::SolveCellSystems 0 0% 37.48% 1082ms 25.96% KSP_PCApply.lto_priv.18 2ms 0.048% 37.52% 1017ms 24.40% KSPConvergedDefault 0 0% 37.52% 988ms 23.70% KSP_PCApply (partial-inline) 13ms 0.31% 37.84% 653ms 15.67% AbstractCardiacCell::ComputeExceptVoltage 7ms 0.17% 38.00% 566ms 13.58% AbstractOneStepIvpOdeSolver::InternalSolve 36ms 0.86% 38.87% 482ms 11.56% EulerIvpOdeSolver::CalculateNextYValue 128ms 3.07% 41.94% 441ms 10.58% CellLuoRudy1991FromCellML::EvaluateYDerivatives 2ms 0.048% 41.99% 412ms 9.88% MatMult 2ms 0.048% 42.03% 405ms 9.72% MatMult_SeqAIJ 400ms 9.60% 51.63% 405ms 9.72% MatMult_SeqAIJ_Inode (inline) 175ms 4.20% 55.83% 398ms 9.55% __GI___exp 10ms 0.24% 56.07% 382ms 9.17% AbstractCardiacTissue::UpdateCaches (inline) 126ms 3.02% 59.09% 362ms 8.69% CellLuoRudy1991FromCellML::GetIIonic 201ms 4.82% 63.92% 212ms 5.09% __ieee754_exp_fma 3ms 0.072% 63.99% 204ms 4.89% MatNullSpaceRemove 1ms 0.024% 64.01% 193ms 4.63% VecDuplicate 42ms 1.01% 65.02% 189ms 4.53% BidomainSolver::SetupLinearSystem 2ms 0.048% 65.07% 147ms 3.53% VecMDot 9ms 0.22% 65.28% 145ms 3.48% VecMXDot_Private 33ms 0.79% 66.07% 121ms 2.90% MPI_Wtime 1ms 0.024% 66.10% 118ms 2.83% std::pow (inline) 18ms 0.43% 66.53% 117ms 2.81% __pow 115ms 2.76% 69.29% 115ms 2.76% ddot_ 6ms 0.14% 69.43% 107ms 2.57% VecCopy 96ms 2.30% 71.74% 103ms 2.47% VecMDot_Seq 1ms 0.024% 71.76% 100ms 2.40% VecDuplicate_Seq 11ms 0.26% 72.02% 99ms 2.38% __ieee754_pow_fma 6ms 0.14% 72.17% 92ms 2.21% VecDuplicate_MPI (partial-inline) 15ms 0.36% 72.53% 91ms 2.18% PetscLogEventBeginDefault 17ms 0.41% 72.94% 90ms 2.16% PetscLogEventEndDefault 4ms 0.096% 73.03% 88ms 2.11% __GI___clock_gettime 84ms 2.02% 75.05% 84ms 2.02% [[vdso]] 3ms 0.072% 75.12% 82ms 1.97% VecDot 4ms 0.096% 75.22% 81ms 1.94% PetscMallocA 4ms 0.096% 75.31% 78ms 1.87% VecCreate 3ms 0.072% 75.38% 77ms 1.85% PetscMallocAlign (partial-inline) 0 0% 75.38% 71ms 1.70% VecDot_Seq 1ms 0.024% 75.41% 71ms 1.70% VecXDot_Seq_Private.constprop.0 1ms 0.024% 75.43% 65ms 1.56% VecNorm 0 0% 75.43% 62ms 1.49% PetscMemcpy (inline) 0 0% 75.43% 61ms 1.46% KSP_RemoveNullSpace (inline) 1ms 0.024% 75.46% 61ms 1.46% VecDestroy 28ms 0.67% 76.13% 60ms 1.44% CellLuoRudy1991FromCellML::VerifyStateVariables 60ms 1.44% 77.57% 60ms 1.44% __memcpy_avx_unaligned_erms 59ms 1.42% 78.98% 59ms 1.42% log_inline (inline) 0 0% 78.98% 57ms 1.37% VecNorm_Seq 3ms 0.072% 79.05% 54ms 1.30% VecMAXPY 8ms 0.19% 79.25% 54ms 1.30% VecSetType 1ms 0.024% 79.27% 53ms 1.27% VecCopy_Seq (partial-inline) 1ms 0.024% 79.29% 51ms 1.22% VecCreate_MPI_Private 8ms 0.19% 79.49% 47ms 1.13% __GI___libc_malloc 2ms 0.048% 79.53% 47ms 1.13% __posix_memalign 0 0% 79.53% 39ms 0.94% PetscMemzero (inline) 0 0% 79.53% 38ms 0.91% VecCreate_Seq 37ms 0.89% 80.42% 37ms 0.89% __memset_avx2_unaligned_erms 34ms 0.82% 81.24% 36ms 0.86% VecMAXPY_Seq 6ms 0.14% 81.38% 34ms 0.82% PetscHeaderCreate_Private 13ms 0.31% 81.69% 34ms 0.82% TimeStepper::TimeStepper 0 0% 81.69% 32ms 0.77% CxxTest::RealWorldDescription::setUp 0 0% 81.69% 32ms 0.77% PetscInitialize 0 0% 81.69% 32ms 0.77% PetscSetup::setUpWorld 0 0% 81.69% 32ms 0.77% PetscSetupUtils::CommonSetup 0 0% 81.69% 32ms 0.77% PetscSetupUtils::InitialisePetsc 5ms 0.12% 81.81% 32ms 0.77% VecSet 0 0% 81.81% 31ms 0.74% PMPI_Init_thread 3ms 0.072% 81.89% 31ms 0.74% PetscHeaderDestroy_Private 31ms 0.74% 82.63% 31ms 0.74% TimeStepper::CalculateNextTime 24ms 0.58% 83.21% 31ms 0.74% _int_malloc 0 0% 83.21% 31ms 0.74% ompi_mpi_init 1ms 0.024% 83.23% 30ms 0.72% VecAXPY 3ms 0.072% 83.30% 29ms 0.7% VecScale 9ms 0.22% 83.52% 28ms 0.67% PetscOptionsFindPair 4ms 0.096% 83.61% 28ms 0.67% VecStashCreate_Private 5ms 0.12% 83.73% 25ms 0.6% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 83.73% 25ms 0.6% AbstractBidomainSolver::FinaliseLinearSystem 7ms 0.17% 83.90% 24ms 0.58% AbstractCardiacCell::SetVoltage (partial-inline) 24ms 0.58% 84.48% 24ms 0.58% [libchaste_heart.so] 0 0% 84.48% 23ms 0.55% 19ms 0.46% 84.93% 23ms 0.55% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 0 0% 84.93% 23ms 0.55% VecNorm_MPI 1ms 0.024% 84.96% 23ms 0.55% VecNorm_MPI_Default.constprop.0 22ms 0.53% 85.48% 23ms 0.55% __ieee754_log_fma 23ms 0.55% 86.04% 23ms 0.55% exp_inline (inline) 4ms 0.096% 86.13% 22ms 0.53% __GI___libc_free 3ms 0.072% 86.20% 21ms 0.5% VecCreate_Seq_Private