File: TestConvergenceEfficiency Type: cpu Showing nodes accounting for 108568ms, 91.80% of 118261ms total Dropped 1145 nodes (cum <= 591.30ms) flat flat% sum% cum cum% 0 0% 0% 118247ms 100% __libc_start_call_main 0 0% 0% 118247ms 100% __libc_start_main_impl 0 0% 0% 118247ms 100% _start 0 0% 0% 118244ms 100% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 118244ms 100% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 118244ms 100% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 118244ms 100% main 0 0% 0% 118207ms 100% AbstractConvergenceTester::Converge 0 0% 0% 118207ms 100% CxxTest::RealTestDescription::run 0 0% 0% 118207ms 100% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 118207ms 100% CxxTest::TestRunner::runTest (inline) 0 0% 0% 118207ms 100% TestConvergenceEfficiency::Test3DSpace10Efficiency (inline) 0 0% 0% 118207ms 100% TestDescription_TestConvergenceEfficiency_Test3DSpace10Efficiency::runTest (inline) 2ms 0.0017% 0.0017% 116931ms 98.88% AbstractCardiacProblem::Solve 4ms 0.0034% 0.0051% 116283ms 98.33% AbstractDynamicLinearPdeSolver::Solve 9ms 0.0076% 0.013% 64962ms 54.93% LinearSystem::Solve 0 0% 0.013% 64483ms 54.53% KSPSolve 5ms 0.0042% 0.017% 64483ms 54.53% KSPSolve_Private 10ms 0.0085% 0.025% 64134ms 54.23% KSPSolve_SYMMLQ 244ms 0.21% 0.23% 42607ms 36.03% AbstractCardiacTissue::SolveCellSystems 4ms 0.0034% 0.24% 36535ms 30.89% PCApply 5ms 0.0042% 0.24% 36519ms 30.88% PCApply_BJacobi_Singleblock 0 0% 0.24% 34158ms 28.88% KSPSolve_PREONLY (partial-inline) 5ms 0.0042% 0.24% 32984ms 27.89% PCApply_ICC 7ms 0.0059% 0.25% 32979ms 27.89% MatSolve 32530ms 27.51% 27.76% 32972ms 27.88% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 1399ms 1.18% 28.94% 32666ms 27.62% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 28.94% 31446ms 26.59% KSP_PCApply.lto_priv.18 6984ms 5.91% 34.84% 28293ms 23.92% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 5ms 0.0042% 34.85% 21395ms 18.09% MatMult 220ms 0.19% 35.04% 21390ms 18.09% MatMult_SeqAIJ (partial-inline) 20854ms 17.63% 52.67% 21390ms 18.09% MatMult_SeqAIJ_Inode (inline) 1963ms 1.66% 54.33% 14710ms 12.44% CardiacNewtonSolver::Solve 428ms 0.36% 54.69% 9058ms 7.66% AbstractCardiacTissue::UpdateCaches (inline) 4283ms 3.62% 58.31% 8612ms 7.28% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1971ms 1.67% 59.98% 8448ms 7.14% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 1039ms 0.88% 60.86% 7648ms 6.47% BidomainSolver::SetupLinearSystem 2ms 0.0017% 60.86% 7164ms 6.06% KSP_PCApply (partial-inline) 1024ms 0.87% 61.73% 7019ms 5.94% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::IndexTable0 (inline) 1ms 0.00085% 61.73% 6578ms 5.56% KSPConvergedDefault 5719ms 4.84% 66.56% 5719ms 4.84% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::_lookup_0_row (inline) 3995ms 3.38% 69.94% 4037ms 3.41% __ieee754_log_fma 0 0% 69.94% 3711ms 3.14% boost::numeric::ublas::norm_inf (inline) 2504ms 2.12% 72.06% 3711ms 3.14% boost::numeric::ublas::vector_norm_inf::apply (inline) 0 0% 72.06% 3711ms 3.14% boost::numeric::ublas::vector_scalar_unary::evaluate (inline) 0 0% 72.06% 3711ms 3.14% boost::numeric::ublas::vector_scalar_unary::operator double (inline) 38ms 0.032% 72.09% 3372ms 2.85% std::pow (inline) 6ms 0.0051% 72.09% 3364ms 2.84% MatNullSpaceRemove 417ms 0.35% 72.45% 3329ms 2.81% __pow 3131ms 2.65% 75.09% 3131ms 2.65% __memcpy_avx_unaligned_erms 0 0% 75.09% 3102ms 2.62% PetscMemcpy (inline) 354ms 0.3% 75.39% 2892ms 2.45% __ieee754_pow_fma 2819ms 2.38% 77.78% 2819ms 2.38% ddot_ 1667ms 1.41% 79.19% 2796ms 2.36% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 22ms 0.019% 79.21% 2699ms 2.28% VecCopy 2ms 0.0017% 79.21% 2674ms 2.26% VecCopy_Seq (partial-inline) 19ms 0.016% 79.22% 2520ms 2.13% VecAXPY 8ms 0.0068% 79.23% 2501ms 2.11% VecAXPY_Seq 2474ms 2.09% 81.32% 2474ms 2.09% daxpy_ 3ms 0.0025% 81.33% 2313ms 1.96% VecDot 1ms 0.00085% 81.33% 2310ms 1.95% VecDot_Seq 1ms 0.00085% 81.33% 2309ms 1.95% VecXDot_Seq_Private.constprop.0 2ms 0.0017% 81.33% 2048ms 1.73% AbstractFeVolumeIntegralAssembler::DoAssemble 1ms 0.00085% 81.33% 1906ms 1.61% VecMDot 12ms 0.01% 81.34% 1905ms 1.61% VecMXDot_Private 1883ms 1.59% 82.93% 1891ms 1.60% VecMDot_Seq 35ms 0.03% 82.96% 1735ms 1.47% AbstractFeVolumeIntegralAssembler::AssembleOnElement 1645ms 1.39% 84.35% 1705ms 1.44% exp_inline (inline) 7ms 0.0059% 84.36% 1452ms 1.23% VecMAXPY 1438ms 1.22% 85.57% 1445ms 1.22% VecMAXPY_Seq 0 0% 85.57% 1399ms 1.18% AbstractFeAssemblerInterface::AssembleMatrix (inline) 1347ms 1.14% 86.71% 1347ms 1.14% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::CheckIndex0 (inline) 0 0% 86.71% 1141ms 0.96% boost::numeric::ublas::scalar_traits::norm_inf (inline) 0 0% 86.71% 1141ms 0.96% boost::numeric::ublas::scalar_traits::type_abs (inline) 0 0% 86.71% 1141ms 0.96% boost_numeric_ublas_abs (inline) 1141ms 0.96% 87.68% 1141ms 0.96% std::abs (inline) 0 0% 87.68% 1127ms 0.95% CuboidMeshConstructor::Construct 0 0% 87.68% 1126ms 0.95% AbstractTetrahedralMesh::ConstructRegularSlabMesh 3ms 0.0025% 87.68% 1126ms 0.95% DistributedTetrahedralMesh::ConstructCuboid 841ms 0.71% 88.39% 1101ms 0.93% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 10ms 0.0085% 88.40% 1080ms 0.91% boost::numeric::ublas::matrix_assign (inline) 213ms 0.18% 88.58% 1056ms 0.89% boost::numeric::ublas::indexing_matrix_assign 1019ms 0.86% 89.44% 1019ms 0.86% __memset_avx2_unaligned_erms 1ms 0.00085% 89.44% 1012ms 0.86% Element::Element 0 0% 89.44% 1010ms 0.85% PetscMemzero (inline) 1ms 0.00085% 89.44% 1000ms 0.85% AbstractTetrahedralElement::CalculateJacobian 2ms 0.0017% 89.45% 935ms 0.79% AbstractTetrahedralElement::AbstractTetrahedralElement 865ms 0.73% 90.18% 865ms 0.73% [libchaste_heart.so] 1ms 0.00085% 90.18% 864ms 0.73% VecDuplicate 5ms 0.0042% 90.18% 859ms 0.73% BidomainAssembler::ComputeMatrixTerm 6ms 0.0051% 90.19% 857ms 0.72% VecScale 2ms 0.0017% 90.19% 851ms 0.72% VecScale_Seq 846ms 0.72% 90.90% 846ms 0.72% dscal_ 16ms 0.014% 90.92% 839ms 0.71% boost::numeric::ublas::c_matrix::c_matrix (inline) 788ms 0.67% 91.58% 788ms 0.67% log_inline (inline) 1ms 0.00085% 91.58% 767ms 0.65% AbstractBidomainSolver::FinaliseLinearSystem 236ms 0.2% 91.78% 765ms 0.65% AbstractBidomainSolver::CheckCompatibilityCondition 15ms 0.013% 91.80% 731ms 0.62% PetscMallocA 3ms 0.0025% 91.80% 726ms 0.61% VecNorm 2ms 0.0017% 91.80% 717ms 0.61% VecNorm_Seq 3ms 0.0025% 91.80% 716ms 0.61% PetscMallocAlign (partial-inline) 0 0% 91.80% 649ms 0.55% AbstractFeAssemblerInterface::Assemble (inline)