File: Test3dBidomainProblemForEfficiencyWithFasterOdes Type: cpu Showing nodes accounting for 3644ms, 89.42% of 4075ms total Dropped 371 nodes (cum <= 20.38ms) flat flat% sum% cum cum% 0 0% 0% 4067ms 99.80% __libc_start_call_main 0 0% 0% 4067ms 99.80% __libc_start_main_impl 0 0% 0% 4067ms 99.80% _start 0 0% 0% 4064ms 99.73% main 0 0% 0% 4024ms 98.75% Test3dBidomainProblemForEfficiencyWithFasterOdes::TestBidomain3d 1ms 0.025% 0.025% 4016ms 98.55% AbstractCardiacProblem::Solve 1ms 0.025% 0.049% 3999ms 98.13% AbstractDynamicLinearPdeSolver::Solve 1ms 0.025% 0.074% 2029ms 49.79% LinearSystem::Solve 0 0% 0.074% 1988ms 48.79% KSPSolve 5ms 0.12% 0.2% 1988ms 48.79% KSPSolve_Private 3ms 0.074% 0.27% 1951ms 47.88% KSPSolve_CG 24ms 0.59% 0.86% 1678ms 41.18% AbstractCardiacTissue::SolveCellSystems 3ms 0.074% 0.93% 1282ms 31.46% PCApply 2ms 0.049% 0.98% 1271ms 31.19% PCApply_BJacobi_Singleblock 41ms 1.01% 1.99% 1097ms 26.92% AbstractBackwardEulerCardiacCell::ComputeExceptVoltage 0 0% 1.99% 1051ms 25.79% KSPSolve_PREONLY (partial-inline) 0 0% 1.99% 1001ms 24.56% KSP_PCApply.lto_priv.7 3ms 0.074% 2.06% 997ms 24.47% MatSolve 0 0% 2.06% 997ms 24.47% PCApply_ICC 984ms 24.15% 26.21% 989ms 24.27% MatSolve_SeqSBAIJ_1_NaturalOrdering 335ms 8.22% 34.43% 973ms 23.88% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeOneStepExceptVoltage 3ms 0.074% 34.50% 510ms 12.52% MatMult 315ms 7.73% 42.23% 499ms 12.25% CellLuoRudy1991FromCellMLBackwardEulerOpt::GetIIonic 6ms 0.15% 42.38% 497ms 12.20% MatMult_SeqAIJ (partial-inline) 486ms 11.93% 54.31% 496ms 12.17% MatMult_SeqAIJ_Inode (inline) 277ms 6.80% 61.10% 429ms 10.53% CardiacNewtonSolver::Solve 1ms 0.025% 61.13% 400ms 9.82% KSPConvergedDefault 0 0% 61.13% 377ms 9.25% KSP_PCApply (partial-inline) 66ms 1.62% 62.75% 259ms 6.36% BidomainSolver::SetupLinearSystem 21ms 0.52% 63.26% 212ms 5.20% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::Instance 59ms 1.45% 64.71% 191ms 4.69% CellLuoRudy1991FromCellMLBackwardEulerOpt_LookupTables::RegenerateTables 1ms 0.025% 64.74% 164ms 4.02% MatNullSpaceRemove 15ms 0.37% 65.10% 142ms 3.48% __pow 0 0% 65.10% 131ms 3.21% VecDuplicate 71ms 1.74% 66.85% 130ms 3.19% __GI___exp 123ms 3.02% 69.87% 127ms 3.12% __ieee754_log_fma 19ms 0.47% 70.33% 126ms 3.09% __ieee754_pow_fma 113ms 2.77% 73.10% 113ms 2.77% ddot_ 1ms 0.025% 73.13% 95ms 2.33% VecMDot 5ms 0.12% 73.25% 94ms 2.31% VecMXDot_Private 26ms 0.64% 73.89% 90ms 2.21% MPI_Wtime 1ms 0.025% 73.91% 84ms 2.06% VecNorm 52ms 1.28% 75.19% 79ms 1.94% CellLuoRudy1991FromCellMLBackwardEulerOpt::VerifyStateVariables 1ms 0.025% 75.21% 74ms 1.82% VecTDot 0 0% 75.21% 73ms 1.79% VecDuplicate_Seq 72ms 1.77% 76.98% 73ms 1.79% exp_inline (inline) 1ms 0.025% 77.01% 69ms 1.69% VecNorm_Seq 6ms 0.15% 77.15% 68ms 1.67% VecMAXPY 14ms 0.34% 77.50% 67ms 1.64% PetscLogEventBeginDefault 61ms 1.50% 78.99% 65ms 1.60% VecMDot_Seq 1ms 0.025% 79.02% 64ms 1.57% __GI___clock_gettime 63ms 1.55% 80.56% 63ms 1.55% [[vdso]] 0 0% 80.56% 60ms 1.47% VecTDot_Seq 1ms 0.025% 80.59% 60ms 1.47% VecXDot_Seq_Private.constprop.0 9ms 0.22% 80.81% 59ms 1.45% PetscLogEventEndDefault 0 0% 80.81% 58ms 1.42% VecCreate 3ms 0.074% 80.88% 58ms 1.42% VecDuplicate_MPI 52ms 1.28% 82.16% 57ms 1.40% __ieee754_exp_fma 6ms 0.15% 82.31% 54ms 1.33% PetscMallocA 7ms 0.17% 82.48% 54ms 1.33% VecDestroy 38ms 0.93% 83.41% 52ms 1.28% CellLuoRudy1991FromCellMLBackwardEulerOpt::ComputeResidual 1ms 0.025% 83.44% 48ms 1.18% PetscMallocAlign (partial-inline) 33ms 0.81% 84.25% 38ms 0.93% VecMAXPY_Seq 0 0% 84.25% 36ms 0.88% CxxTest::RealWorldDescription::setUp 0 0% 84.25% 36ms 0.88% PetscInitialize 0 0% 84.25% 36ms 0.88% PetscSetup::setUpWorld 0 0% 84.25% 36ms 0.88% PetscSetupUtils::CommonSetup 0 0% 84.25% 36ms 0.88% PetscSetupUtils::InitialisePetsc 8ms 0.2% 84.44% 36ms 0.88% VecCopy 0 0% 84.44% 35ms 0.86% PMPI_Init_thread 0 0% 84.44% 35ms 0.86% ompi_mpi_init 4ms 0.098% 84.54% 32ms 0.79% VecSetType 2ms 0.049% 84.59% 31ms 0.76% VecCreate_MPI_Private 5ms 0.12% 84.71% 30ms 0.74% PetscHeaderCreate_Private 30ms 0.74% 85.45% 30ms 0.74% [libchaste_heart.so] 9ms 0.22% 85.67% 30ms 0.74% __GI___libc_malloc 2ms 0.049% 85.72% 30ms 0.74% __posix_memalign 30ms 0.74% 86.45% 30ms 0.74% log_inline (inline) 2ms 0.049% 86.50% 29ms 0.71% 0 0% 86.50% 29ms 0.71% PetscMemzero (inline) 4ms 0.098% 86.60% 27ms 0.66% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 86.60% 27ms 0.66% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 86.60% 27ms 0.66% VecNorm_MPI 0 0% 86.60% 27ms 0.66% VecNorm_MPI_Default.constprop.0 25ms 0.61% 87.21% 25ms 0.61% __memset_avx2_unaligned_erms 0 0% 87.21% 25ms 0.61% orte_init 8ms 0.2% 87.41% 23ms 0.56% __GI___libc_free 22ms 0.54% 87.95% 22ms 0.54% DistributedVector::Iterator::operator!= 0 0% 87.95% 22ms 0.54% PetscMemcpy (inline) 22ms 0.54% 88.49% 22ms 0.54% __memcpy_avx_unaligned_erms 17ms 0.42% 88.91% 22ms 0.54% std::__cxx11::basic_string::basic_string 7ms 0.17% 89.08% 21ms 0.52% AbstractCardiacCell::SetVoltage 5ms 0.12% 89.20% 21ms 0.52% PetscFreeAlign 9ms 0.22% 89.42% 21ms 0.52% PetscOptionsFindPair 0 0% 89.42% 21ms 0.52% VecCreate_Seq