File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3652ms, 88.17% of 4142ms total Dropped 385 nodes (cum <= 20.71ms) flat flat% sum% cum cum% 0 0% 0% 4134ms 99.81% __libc_start_call_main 0 0% 0% 4134ms 99.81% __libc_start_main_impl 0 0% 0% 4134ms 99.81% _start 0 0% 0% 4131ms 99.73% main 0 0% 0% 4094ms 98.84% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 2ms 0.048% 0.048% 4087ms 98.67% AbstractCardiacProblem::Solve 0 0% 0.048% 4077ms 98.43% AbstractDynamicLinearPdeSolver::Solve 1ms 0.024% 0.072% 2049ms 49.47% LinearSystem::Solve 0 0% 0.072% 1961ms 47.34% KSPSolve 6ms 0.14% 0.22% 1961ms 47.34% KSPSolve_Private 1ms 0.024% 0.24% 1874ms 45.24% KSPSolve_SYMMLQ 30ms 0.72% 0.97% 1646ms 39.74% AbstractCardiacTissue::SolveCellSystems 4ms 0.097% 1.06% 1205ms 29.09% PCApply 1ms 0.024% 1.09% 1193ms 28.80% PCApply_BJacobi_Singleblock 0 0% 1.09% 996ms 24.05% KSPSolve_PREONLY (partial-inline) 0 0% 1.09% 957ms 23.10% KSP_PCApply.lto_priv.18 5ms 0.12% 1.21% 948ms 22.89% MatSolve 0 0% 1.21% 948ms 22.89% PCApply_ICC 933ms 22.53% 23.73% 940ms 22.69% MatSolve_SeqSBAIJ_1_NaturalOrdering (partial-inline) 27ms 0.65% 24.38% 920ms 22.21% AbstractCardiacCell::ComputeExceptVoltage 21ms 0.51% 24.89% 788ms 19.02% AbstractOneStepIvpOdeSolver::InternalSolve 34ms 0.82% 25.71% 678ms 16.37% EulerIvpOdeSolver::CalculateNextYValue 183ms 4.42% 30.13% 641ms 15.48% CellLuoRudy1991FromCellML::EvaluateYDerivatives 268ms 6.47% 36.60% 573ms 13.83% __GI___exp 1ms 0.024% 36.62% 543ms 13.11% MatMult 99ms 2.39% 39.01% 533ms 12.87% MatMult_SeqAIJ 194ms 4.68% 43.70% 528ms 12.75% CellLuoRudy1991FromCellML::GetIIonic 431ms 10.41% 54.10% 436ms 10.53% MatMult_SeqAIJ_Inode (inline) 1ms 0.024% 54.13% 338ms 8.16% KSPConvergedDefault 0 0% 54.13% 326ms 7.87% KSP_PCApply (partial-inline) 72ms 1.74% 55.87% 318ms 7.68% BidomainSolver::SetupLinearSystem 268ms 6.47% 62.34% 288ms 6.95% __ieee754_exp_fma 1ms 0.024% 62.36% 167ms 4.03% VecDuplicate 13ms 0.31% 62.68% 164ms 3.96% __pow 3ms 0.072% 62.75% 157ms 3.79% MatNullSpaceRemove 20ms 0.48% 63.23% 151ms 3.65% __ieee754_pow_fma 38ms 0.92% 64.15% 133ms 3.21% MPI_Wtime 93ms 2.25% 66.39% 120ms 2.90% CellLuoRudy1991FromCellML::VerifyStateVariables 1ms 0.024% 66.42% 101ms 2.44% VecMDot 5ms 0.12% 66.54% 100ms 2.41% VecCopy 4ms 0.097% 66.63% 100ms 2.41% VecDuplicate_MPI 6ms 0.14% 66.78% 100ms 2.41% VecMXDot_Private 17ms 0.41% 67.19% 98ms 2.37% PetscLogEventBeginDefault 23ms 0.56% 67.75% 96ms 2.32% PetscLogEventEndDefault 95ms 2.29% 70.04% 95ms 2.29% [[vdso]] 0 0% 70.04% 95ms 2.29% __GI___clock_gettime 85ms 2.05% 72.09% 85ms 2.05% ddot_ 77ms 1.86% 73.95% 77ms 1.86% log_inline (inline) 12ms 0.29% 74.24% 70ms 1.69% PetscMallocA 1ms 0.024% 74.26% 67ms 1.62% VecCreate 1ms 0.024% 74.29% 67ms 1.62% VecNorm 1ms 0.024% 74.31% 66ms 1.59% VecDuplicate_Seq 0 0% 74.31% 63ms 1.52% VecDot 59ms 1.42% 75.74% 62ms 1.50% VecMDot_Seq 13ms 0.31% 76.05% 60ms 1.45% AbstractBidomainSolver::CheckCompatibilityCondition 0 0% 76.05% 60ms 1.45% AbstractBidomainSolver::FinaliseLinearSystem 2ms 0.048% 76.10% 58ms 1.40% PetscMallocAlign (partial-inline) 1ms 0.024% 76.12% 57ms 1.38% VecNorm_Seq 0 0% 76.12% 56ms 1.35% VecDot_Seq 0 0% 76.12% 56ms 1.35% VecXDot_Seq_Private.constprop.0 6ms 0.14% 76.27% 55ms 1.33% VecCreate_MPI_Private 1ms 0.024% 76.29% 53ms 1.28% VecMAXPY 0 0% 76.29% 52ms 1.26% PetscMemcpy (inline) 45ms 1.09% 77.38% 47ms 1.13% exp_inline (inline) 0 0% 77.38% 44ms 1.06% KSP_RemoveNullSpace (inline) 44ms 1.06% 78.44% 44ms 1.06% __memcpy_avx_unaligned_erms 4ms 0.097% 78.54% 42ms 1.01% VecCopy_Seq (partial-inline) 4ms 0.097% 78.63% 41ms 0.99% VecDestroy 16ms 0.39% 79.02% 39ms 0.94% TimeStepper::TimeStepper 36ms 0.87% 79.89% 36ms 0.87% DistributedVector::Iterator::operator!= 36ms 0.87% 80.76% 36ms 0.87% TimeStepper::CalculateNextTime 0 0% 80.76% 36ms 0.87% VecNorm_MPI 0 0% 80.76% 36ms 0.87% VecNorm_MPI_Default.constprop.0 9ms 0.22% 80.98% 36ms 0.87% __GI___libc_malloc 29ms 0.7% 81.68% 35ms 0.85% AbstractOneStepIvpOdeSolver::Solve 34ms 0.82% 82.50% 35ms 0.85% __ieee754_log_fma 3ms 0.072% 82.57% 35ms 0.85% __posix_memalign 0 0% 82.57% 33ms 0.8% VecStashCreate_Private 0 0% 82.57% 32ms 0.77% CxxTest::RealWorldDescription::setUp 0 0% 82.57% 32ms 0.77% PMPI_Init_thread 0 0% 82.57% 32ms 0.77% PetscInitialize 0 0% 82.57% 32ms 0.77% PetscSetup::setUpWorld 0 0% 82.57% 32ms 0.77% PetscSetupUtils::CommonSetup 0 0% 82.57% 32ms 0.77% PetscSetupUtils::InitialisePetsc 2ms 0.048% 82.62% 32ms 0.77% VecSetType 32ms 0.77% 83.39% 32ms 0.77% [libchaste_heart.so] 0 0% 83.39% 32ms 0.77% ompi_mpi_init 28ms 0.68% 84.07% 31ms 0.75% VecMAXPY_Seq 25ms 0.6% 84.67% 30ms 0.72% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 5ms 0.12% 84.79% 29ms 0.7% PMPI_Comm_get_attr 0 0% 84.79% 29ms 0.7% PetscMemzero (inline) 2ms 0.048% 84.84% 29ms 0.7% VecAXPY 29ms 0.7% 85.54% 29ms 0.7% __memset_avx2_unaligned_erms 13ms 0.31% 85.85% 27ms 0.65% TimeStepper::AdvanceOneTimeStep 2ms 0.048% 85.90% 26ms 0.63% PetscHeaderCreate_Private 26ms 0.63% 86.53% 26ms 0.63% dasum_ 15ms 0.36% 86.89% 26ms 0.63% top12 (inline) 1ms 0.024% 86.91% 25ms 0.6% 0 0% 86.91% 25ms 0.6% VecCreate_Seq 16ms 0.39% 87.30% 25ms 0.6% std::__cxx11::basic_string::basic_string 9ms 0.22% 87.52% 24ms 0.58% ompi_attr_get_c 13ms 0.31% 87.83% 22ms 0.53% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 1ms 0.024% 87.86% 22ms 0.53% VecSet 0 0% 87.86% 22ms 0.53% orte_init 2ms 0.048% 87.90% 21ms 0.51% PetscOptionsFindPair 11ms 0.27% 88.17% 21ms 0.51% _int_malloc