File: Test3dBidomainProblemWithPermForEfficiency Type: cpu Showing nodes accounting for 3694ms, 87.47% of 4223ms total Dropped 351 nodes (cum <= 21.11ms) flat flat% sum% cum cum% 0 0% 0% 4216ms 99.83% __libc_start_call_main 0 0% 0% 4216ms 99.83% __libc_start_main_impl 0 0% 0% 4216ms 99.83% _start 0 0% 0% 4213ms 99.76% main 0 0% 0% 4171ms 98.77% Test3dBidomainProblemWithPermForEfficiency::TestBidomain3d 1ms 0.024% 0.024% 4165ms 98.63% AbstractCardiacProblem::Solve 0 0% 0.024% 4151ms 98.30% AbstractDynamicLinearPdeSolver::Solve 40ms 0.95% 0.97% 1990ms 47.12% AbstractCardiacTissue::SolveCellSystems 2ms 0.047% 1.02% 1523ms 36.06% LinearSystem::Solve 0 0% 1.02% 1398ms 33.10% KSPSolve 5ms 0.12% 1.14% 1398ms 33.10% KSPSolve_Private 1ms 0.024% 1.16% 1290ms 30.55% KSPSolve_SYMMLQ 35ms 0.83% 1.99% 1128ms 26.71% AbstractCardiacCell::ComputeExceptVoltage 34ms 0.81% 2.79% 975ms 23.09% AbstractOneStepIvpOdeSolver::InternalSolve 53ms 1.26% 4.05% 829ms 19.63% EulerIvpOdeSolver::CalculateNextYValue 224ms 5.30% 9.35% 765ms 18.12% CellLuoRudy1991FromCellML::EvaluateYDerivatives 2ms 0.047% 9.40% 735ms 17.40% PCApply 1ms 0.024% 9.42% 725ms 17.17% PCApply_BJacobi_Singleblock 312ms 7.39% 16.81% 692ms 16.39% __GI___exp 223ms 5.28% 22.09% 633ms 14.99% CellLuoRudy1991FromCellML::GetIIonic 5ms 0.12% 22.21% 627ms 14.85% MatMult 4ms 0.095% 22.31% 615ms 14.56% MatMult_SeqAIJ 608ms 14.40% 36.70% 615ms 14.56% MatMult_SeqAIJ_Inode (inline) 0 0% 36.70% 610ms 14.44% KSPSolve_PREONLY (partial-inline) 0 0% 36.70% 577ms 13.66% KSP_PCApply.lto_priv.18 1ms 0.024% 36.73% 576ms 13.64% PCApply_ICC 3ms 0.071% 36.80% 575ms 13.62% MatSolve 562ms 13.31% 50.11% 567ms 13.43% MatSolve_SeqSBAIJ_1_NaturalOrdering 122ms 2.89% 53.00% 549ms 13.00% BidomainSolver::SetupLinearSystem 333ms 7.89% 60.88% 365ms 8.64% __ieee754_exp_fma 1ms 0.024% 60.90% 228ms 5.40% KSPConvergedDefault 0 0% 60.90% 216ms 5.11% KSP_PCApply (partial-inline) 15ms 0.36% 61.26% 203ms 4.81% __pow 18ms 0.43% 61.69% 188ms 4.45% __ieee754_pow_fma 0 0% 61.69% 157ms 3.72% VecDuplicate 109ms 2.58% 64.27% 139ms 3.29% CellLuoRudy1991FromCellML::VerifyStateVariables 5ms 0.12% 64.39% 124ms 2.94% VecDuplicate_MPI 1ms 0.024% 64.41% 116ms 2.75% MatNullSpaceRemove 21ms 0.5% 64.91% 114ms 2.70% MPI_Wtime 10ms 0.24% 65.14% 97ms 2.30% VecCopy 1ms 0.024% 65.17% 93ms 2.20% __GI___clock_gettime 93ms 2.20% 67.37% 93ms 2.20% log_inline (inline) 92ms 2.18% 69.55% 92ms 2.18% [[vdso]] 1ms 0.024% 69.57% 87ms 2.06% AbstractBidomainSolver::FinaliseLinearSystem 0 0% 69.57% 87ms 2.06% VecMDot 6ms 0.14% 69.71% 87ms 2.06% VecMXDot_Private 16ms 0.38% 70.09% 85ms 2.01% AbstractBidomainSolver::CheckCompatibilityCondition 18ms 0.43% 70.52% 84ms 1.99% PetscLogEventBeginDefault 72ms 1.70% 72.22% 73ms 1.73% exp_inline (inline) 18ms 0.43% 72.65% 70ms 1.66% PetscLogEventEndDefault 6ms 0.14% 72.79% 70ms 1.66% VecCreate_MPI_Private 5ms 0.12% 72.91% 68ms 1.61% VecNorm 51ms 1.21% 74.12% 56ms 1.33% VecMDot_Seq 7ms 0.17% 74.28% 55ms 1.30% PetscMallocA 1ms 0.024% 74.31% 55ms 1.30% VecCreate 54ms 1.28% 75.59% 54ms 1.28% DistributedVector::Iterator::operator!= 2ms 0.047% 75.63% 54ms 1.28% PetscTimeSubtract (inline) 32ms 0.76% 76.39% 53ms 1.26% TimeStepper::TimeStepper 52ms 1.23% 77.62% 52ms 1.23% ddot_ 1ms 0.024% 77.65% 51ms 1.21% VecNorm_Seq 1ms 0.024% 77.67% 48ms 1.14% PetscMallocAlign (partial-inline) 0 0% 77.67% 47ms 1.11% VecNorm_MPI 1ms 0.024% 77.69% 47ms 1.11% VecNorm_MPI_Default.constprop.0 46ms 1.09% 78.78% 46ms 1.09% __memcpy_avx_unaligned_erms 0 0% 78.78% 45ms 1.07% PetscMemcpy (inline) 42ms 0.99% 79.78% 42ms 0.99% [libchaste_heart.so] 0 0% 79.78% 41ms 0.97% VecCopy_Seq (partial-inline) 1ms 0.024% 79.80% 41ms 0.97% VecDot 1ms 0.024% 79.82% 39ms 0.92% VecStashCreate_Private 0 0% 79.82% 37ms 0.88% CxxTest::RealWorldDescription::setUp 0 0% 79.82% 37ms 0.88% PetscInitialize 0 0% 79.82% 37ms 0.88% PetscSetup::setUpWorld 0 0% 79.82% 37ms 0.88% PetscSetupUtils::CommonSetup 0 0% 79.82% 37ms 0.88% PetscSetupUtils::InitialisePetsc 0 0% 79.82% 36ms 0.85% PMPI_Init_thread 0 0% 79.82% 36ms 0.85% ompi_mpi_init 30ms 0.71% 80.54% 35ms 0.83% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 31ms 0.73% 81.27% 35ms 0.83% AbstractOneStepIvpOdeSolver::Solve 35ms 0.83% 82.10% 35ms 0.83% __memset_avx2_unaligned_erms 0 0% 82.10% 34ms 0.81% PetscMemzero (inline) 0 0% 82.10% 34ms 0.81% VecDot_Seq 0 0% 82.10% 34ms 0.81% VecXDot_Seq_Private.constprop.0 34ms 0.81% 82.90% 34ms 0.81% __ieee754_log_fma 9ms 0.21% 83.12% 33ms 0.78% PetscOptionsFindPair 1ms 0.024% 83.14% 33ms 0.78% VecDuplicate_Seq 2ms 0.047% 83.19% 32ms 0.76% 15ms 0.36% 83.54% 32ms 0.76% top12 (inline) 19ms 0.45% 83.99% 31ms 0.73% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 1ms 0.024% 84.02% 31ms 0.73% VecAXPY 31ms 0.73% 84.75% 31ms 0.73% dasum_ 29ms 0.69% 85.44% 29ms 0.69% TimeStepper::CalculateNextTime 7ms 0.17% 85.60% 29ms 0.69% __GI___libc_malloc 5ms 0.12% 85.72% 28ms 0.66% VecMAXPY 2ms 0.047% 85.77% 27ms 0.64% VecDestroy 5ms 0.12% 85.89% 26ms 0.62% PetscHeaderCreate_Private 1ms 0.024% 85.91% 26ms 0.62% VecMDot_MPI 0 0% 85.91% 26ms 0.62% orte_init 0 0% 85.91% 25ms 0.59% VecMXDot_MPI_Default (inline) 16ms 0.38% 86.29% 25ms 0.59% std::__cxx11::basic_string::basic_string 0 0% 86.29% 24ms 0.57% PMPI_Comm_get_attr 1ms 0.024% 86.31% 24ms 0.57% __posix_memalign 8ms 0.19% 86.50% 24ms 0.57% ompi_attr_get_c 0 0% 86.50% 23ms 0.54% PetscVecTools::Finalise 2ms 0.047% 86.55% 23ms 0.54% VecAssemblyBegin 6ms 0.14% 86.69% 23ms 0.54% kh_get_HO (inline) 11ms 0.26% 86.95% 22ms 0.52% TimeStepper::AdvanceOneTimeStep 22ms 0.52% 87.47% 22ms 0.52% asuint64 (inline)