File: Test3dBidomainProblemWithMetisForEfficiency Type: cpu Showing nodes accounting for 3539ms, 86.11% of 4110ms total Dropped 433 nodes (cum <= 20.55ms) flat flat% sum% cum cum% 0 0% 0% 4101ms 99.78% __libc_start_call_main 0 0% 0% 4101ms 99.78% __libc_start_main_impl 0 0% 0% 4101ms 99.78% _start 0 0% 0% 4098ms 99.71% CxxTest::ErrorFormatter::run (inline) 0 0% 0% 4098ms 99.71% CxxTest::TestRunner::runAllTests (inline) 0 0% 0% 4098ms 99.71% CxxTest::TestRunner::runWorld (inline) 0 0% 0% 4098ms 99.71% main 0 0% 0% 4066ms 98.93% CxxTest::TestRunner::runSuite (inline) 0 0% 0% 4066ms 98.93% CxxTest::TestRunner::runTest (inline) 0 0% 0% 4065ms 98.91% Test3dBidomainProblemWithMetisForEfficiency::TestBidomain3d 0 0% 0% 4058ms 98.73% AbstractCardiacProblem::Solve 0 0% 0% 4042ms 98.35% AbstractDynamicLinearPdeSolver::Solve 0 0% 0% 2095ms 50.97% LinearSystem::Solve 1ms 0.024% 0.024% 2052ms 49.93% KSPSolve 9ms 0.22% 0.24% 2052ms 49.93% KSPSolve_Private 4ms 0.097% 0.34% 1981ms 48.20% KSPSolve_SYMMLQ 11ms 0.27% 0.61% 1657ms 40.32% AbstractCardiacTissue::SolveCellSystems 4ms 0.097% 0.71% 1261ms 30.68% PCApply 1ms 0.024% 0.73% 1248ms 30.36% PCApply_BJacobi_Singleblock 1ms 0.024% 0.75% 1036ms 25.21% KSPSolve_PREONLY 2ms 0.049% 0.8% 977ms 23.77% MatSolve 0 0% 0.8% 977ms 23.77% PCApply_ICC 964ms 23.45% 24.26% 968ms 23.55% MatSolve_SeqSBAIJ_1_NaturalOrdering 16ms 0.39% 24.65% 956ms 23.26% AbstractCardiacCell::ComputeExceptVoltage 0 0% 24.65% 917ms 22.31% KSP_PCApply.lto_priv.18 29ms 0.71% 25.35% 834ms 20.29% AbstractOneStepIvpOdeSolver::InternalSolve 49ms 1.19% 26.55% 704ms 17.13% EulerIvpOdeSolver::CalculateNextYValue 193ms 4.70% 31.24% 644ms 15.67% CellLuoRudy1991FromCellML::EvaluateYDerivatives 248ms 6.03% 37.27% 560ms 13.63% __GI___exp 20ms 0.49% 37.76% 558ms 13.58% AbstractCardiacTissue::UpdateCaches (inline) 177ms 4.31% 42.07% 517ms 12.58% CellLuoRudy1991FromCellML::GetIIonic 6ms 0.15% 42.21% 506ms 12.31% MatMult 220ms 5.35% 47.57% 492ms 11.97% MatMult_SeqAIJ 1ms 0.024% 47.59% 474ms 11.53% KSPConvergedDefault 0 0% 47.59% 433ms 10.54% KSP_PCApply (partial-inline) 273ms 6.64% 54.23% 295ms 7.18% __ieee754_exp_fma 266ms 6.47% 60.71% 274ms 6.67% MatMult_SeqAIJ_Inode (inline) 48ms 1.17% 61.87% 241ms 5.86% BidomainSolver::SetupLinearSystem 10ms 0.24% 62.12% 170ms 4.14% __pow 0 0% 62.12% 170ms 4.14% std::pow (inline) 3ms 0.073% 62.19% 160ms 3.89% MatNullSpaceRemove 11ms 0.27% 62.46% 160ms 3.89% __ieee754_pow_fma 0 0% 62.46% 142ms 3.45% VecDuplicate 27ms 0.66% 63.11% 102ms 2.48% MPI_Wtime 0 0% 63.11% 101ms 2.46% VecMDot 7ms 0.17% 63.28% 101ms 2.46% VecMXDot_Private 39ms 0.95% 64.23% 100ms 2.43% CellLuoRudy1991FromCellML::VerifyStateVariables 86ms 2.09% 66.33% 86ms 2.09% ddot_ 1ms 0.024% 66.35% 81ms 1.97% VecDuplicate_MPI 16ms 0.39% 66.74% 80ms 1.95% PetscLogEventBeginDefault 1ms 0.024% 66.76% 77ms 1.87% VecDestroy 75ms 1.82% 68.59% 75ms 1.82% [[vdso]] 0 0% 68.59% 75ms 1.82% __GI___clock_gettime 74ms 1.80% 70.39% 74ms 1.80% log_inline (inline) 5ms 0.12% 70.51% 72ms 1.75% VecCopy 0 0% 70.51% 69ms 1.68% KSP_RemoveNullSpace (inline) 16ms 0.39% 70.90% 69ms 1.68% PetscLogEventEndDefault 62ms 1.51% 72.41% 65ms 1.58% VecMDot_Seq 0 0% 72.41% 63ms 1.53% VecDot 57ms 1.39% 73.80% 63ms 1.53% exp_inline (inline) 0 0% 73.80% 61ms 1.48% VecDuplicate_Seq 0 0% 73.80% 56ms 1.36% VecDot_Seq 3ms 0.073% 73.87% 56ms 1.36% VecMAXPY 3ms 0.073% 73.94% 56ms 1.36% VecNorm 0 0% 73.94% 56ms 1.36% VecXDot_Seq_Private.constprop.0 12ms 0.29% 74.23% 55ms 1.34% PetscMallocA 2ms 0.049% 74.28% 55ms 1.34% VecCreate 4ms 0.097% 74.38% 51ms 1.24% VecAXPY 4ms 0.097% 74.48% 50ms 1.22% VecCreate_MPI_Private 21ms 0.51% 74.99% 46ms 1.12% TimeStepper::TimeStepper 2ms 0.049% 75.04% 44ms 1.07% AbstractBidomainSolver::FinaliseLinearSystem 1ms 0.024% 75.06% 44ms 1.07% VecNorm_Seq 3ms 0.073% 75.13% 43ms 1.05% PetscMallocAlign (partial-inline) 43ms 1.05% 76.18% 43ms 1.05% VecMAXPY_Seq 11ms 0.27% 76.45% 42ms 1.02% AbstractBidomainSolver::CheckCompatibilityCondition 36ms 0.88% 77.32% 37ms 0.9% __ieee754_log_fma 18ms 0.44% 77.76% 35ms 0.85% top12 (inline) 4ms 0.097% 77.86% 34ms 0.83% PetscHeaderDestroy_Private 16ms 0.39% 78.25% 33ms 0.8% AbstractCardiacCellInterface::SetVoltageDerivativeToZero 3ms 0.073% 78.32% 33ms 0.8% VecSetType 32ms 0.78% 79.10% 32ms 0.78% TimeStepper::CalculateNextTime 1ms 0.024% 79.12% 32ms 0.78% VecAXPY_Seq 25ms 0.61% 79.73% 31ms 0.75% AbstractOneStepIvpOdeSolver::Solve 0 0% 79.73% 31ms 0.75% PetscMemcpy (inline) 0 0% 79.73% 31ms 0.75% VecCopy_Seq (partial-inline) 31ms 0.75% 80.49% 31ms 0.75% daxpy_ 30ms 0.73% 81.22% 30ms 0.73% __memcpy_avx_unaligned_erms 0 0% 81.22% 29ms 0.71% VecNorm_MPI 1ms 0.024% 81.24% 29ms 0.71% VecNorm_MPI_Default.constprop.0 29ms 0.71% 81.95% 29ms 0.71% std::isinf (inline) 0 0% 81.95% 28ms 0.68% CxxTest::RealWorldDescription::setUp 28ms 0.68% 82.63% 28ms 0.68% DistributedVector::Iterator::operator!= 0 0% 82.63% 28ms 0.68% PMPI_Init_thread 3ms 0.073% 82.70% 28ms 0.68% PetscHeaderCreate_Private 0 0% 82.70% 28ms 0.68% PetscInitialize 0 0% 82.70% 28ms 0.68% PetscMemzero (inline) 0 0% 82.70% 28ms 0.68% PetscSetup::setUpWorld 0 0% 82.70% 28ms 0.68% PetscSetupUtils::CommonSetup 0 0% 82.70% 28ms 0.68% PetscSetupUtils::InitialisePetsc 28ms 0.68% 83.38% 28ms 0.68% [libchaste_heart.so] 0 0% 83.38% 28ms 0.68% ompi_mpi_init 1ms 0.024% 83.41% 26ms 0.63% AbstractCardiacCell::SetVoltage (partial-inline) 26ms 0.63% 84.04% 26ms 0.63% __memset_avx2_unaligned_erms 2ms 0.049% 84.09% 25ms 0.61% PMPI_Comm_get_attr 1ms 0.024% 84.11% 24ms 0.58% VecCreate_Seq 0 0% 84.11% 23ms 0.56% 20ms 0.49% 84.60% 23ms 0.56% AbstractIvpOdeSolver::SolveAndUpdateStateVariable 3ms 0.073% 84.67% 23ms 0.56% VecDestroy_MPI 3ms 0.073% 84.74% 23ms 0.56% VecStashCreate_Private 6ms 0.15% 84.89% 23ms 0.56% __GI___libc_malloc 23ms 0.56% 85.45% 23ms 0.56% asuint64 (inline) 9ms 0.22% 85.67% 23ms 0.56% ompi_attr_get_c 18ms 0.44% 86.11% 22ms 0.54% AbstractParameterisedSystem::SetAnyVariable